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Annotation type
2
eQTL
1
gene expression
Annotation Category
2
Genetic variant effects
1
Gene expression levels
Annotation type Category
2
RNA-seq
1
snRNA-seq
Available data
1
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
tissue
1
primary cell
Biosample term
1
endothelial cell
1
nephron tubule
1
renal glomerulus
Organ
7
pancreas
6
musculature of body
3
connective tissue
3
epithelium
3
kidney
1
adipose tissue
Life stage
2
adult
Date released
2
February, 2024
1
February, 2020
Software used
367
r
270
macs
68
deseq2
59
abc
58
chromhmm
52
encode-ccres
41
deltasvm
13
cicero
12
seurat
9
salmon
7
samtools
2
hiccups
2
matrix-eQTL
2
rasqual
1
deeptools
1
eigenmt
1
qTLtools
1
umitools
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
2
AMP
1
AMP2
biosample_term_name!
layer of hippocampus
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FileSet
DSR251UJD
released
Annotation file set
: Cell type gene expression mean TPM and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR651LEH
released
Annotation file set
: cis-eQTLs of tubulointerstitial in NEPTUNE cohort
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR230KPJ
released
Annotation file set
: cis-eQTLs of glomerular in NEPTUNE cohort
Lab:
AMP-T2D consortium
Project:
AMP