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Citing CMDGA
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Embeddings type
3
Accessible chromatin
Embeddings Category
3
umap
Underlying Assay
10X scRNA-seq
2
sciATAC-seq
10X scATAC-seq
1
10X snATAC-seq
Available data
3
h5ad
1
mtx
1
tsv
File set status
3
released
Organism
2
Homo sapiens
Biosample type
2
tissue
1
primary cell
Biosample term
2
islet of Langerhans
lung
1
pancreas
1
peripheral blood mononuclear cell
1
tissues
Tissue term
2
pancreas
1
blood
1
tissues
Organ
2
pancreas
1
blood
1
bodily fluid
Date released
1
August, 2021
1
February, 2021
1
November, 2021
Lab
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Project
1
AMP
1
ENCODE
1
T1D
RFA
1
AMP
1
ENCODE3
1
T1D
biosample_term_name!
lung
embeddings_underlying_assay!
10X scATAC-seq
10X scRNA-seq
lab.title!
AMP-T2D consortium
tissue_term_name!
small intestine
Showing 3 of 3 results
table-tab-icon
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FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D