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Getting started
Schema
Clear Filters
Annotation type
2638
pQTL
1671
candidate regulatory elements
1326
target gene predictions
975
histone modifications
943
chromatin state
876
accessible chromatin
816
binding sites
672
gene expression
180
eQTL
136
variant allelic effects
122
differential activity
74
Fine-mapped variants
25
caQTL
7
sQTL
5
hQTL
4
variant to gene
3
meQTL
1
other
1
representative DNase hypersensitivity sites
Annotation Category
5282
cis-regulatory elements
3073
Genetic variant effects
1326
Target gene links
794
Gene expression levels
Annotation type Category
5244
ChIP-seq
3064
DNase-seq
2638
quantitative proteomics
546
RNA-seq
515
ATAC-seq
350
snATAC-seq
305
single cell RNA-seq
189
HiC
139
H3K27ac ChIP-Seq
92
scRNA-seq
84
snDropSeq
47
pCHi-C
25
snRNA-seq
17
Expression arrays
5
Capture-C
4
RNA microarray
3
DNA methylation profiling by array assay
Available data
5958
bed bed3+
3496
tsv
869
bed bed9
490
bigWig
112
txt
40
bigBed bed9
34
bed bed9+
26
csv
12
bed bed3
12
bed narrowPeak
4
bam
3
bed gappedPeak
3
xls
File set status
10473
released
1
archived
1
revoked
Genome assembly (visualization)
6874
hg19
1871
GRCh38
4
hg18
Organism
10429
Homo sapiens
Biosample type
5272
tissue
2377
primary cell
2352
cell line
470
in vitro differentiated cells
4
stem cell
Biosample term
2636
whole blood
129
monocyte
92
heart
86
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
neural progenitor cell
49
CD8-positive, alpha-beta T cell
48
liver
48
thymus
45
right lung
44
B cell
43
hematopoietic multipotent progenitor cell
43
islet of Langerhans
42
right kidney
41
K562
41
endothelial cell
40
renal cortex interstitium
40
renal pelvis
40
retina
37
hepatocyte
36
left kidney
35
spinal cord
34
heart left ventricle
34
spleen
33
macrophage
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
31
CD14-positive monocyte
31
adipose tissue
28
adipocyte
28
smooth muscle cell
26
MCF-7
26
regulatory T cell
25
tibial nerve
24
T cell
24
body of pancreas
23
EndoC_BH1
23
T-helper 1 cell
23
epithelial cell of proximal tubule
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
caudate nucleus
22
foreskin keratinocyte
22
pancreas
22
pericyte cell
21
T-helper 17 cell
21
glomerular endothelial cell
21
keratinocyte
21
natural killer cell
20
breast cancer cell
20
coronary artery
20
mononuclear cell
20
ovary
20
pigmented layer of retina
20
psoas muscle
20
subcutaneous adipose tissue
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
heart right ventricle
19
mesenchymal stem cell
19
right atrium auricular region
18
HFFc6
18
embryonic stem cell
18
gastrocnemius medialis
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
17
HepG2
17
T-helper 2 cell
17
astrocyte
17
cardiac muscle cell
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
testis
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
induced pluripotent stem cell
16
layer of hippocampus
16
pancreatic ductal cell
16
retinal pigment epithelial cell
16
skeletal muscle myoblast
16
skeletal muscle satellite cell
16
skeletal muscle tissue
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
GM12878
15
ascending aorta
15
cerebellum
15
frontal cortex
15
mammary gland epithelial cell
15
neutrophil
14
H9
14
endocrine pancreas
14
prostate gland
14
putamen
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
excitatory neuron
13
neurosphere
13
temporal lobe
12
Ammon's horn
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
11
breast epithelium
11
epithelial cell of prostate
11
erythroblast
11
glomerular visceral epithelial cell
11
left cardiac atrium
11
left renal pelvis
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
hepatic stellate cell
10
kidney tubule cell
10
lymphocyte
10
neuronal stem cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
skin fibroblast
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
liposarcoma
9
pancreatic acinar cell
9
parathyroid adenoma
9
tongue
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
B-lymphoblastoid cell line
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
7
mature neutrophil
7
neural cell
Organ
2898
vasculature
2853
bodily fluid
2842
blood
2836
blood vessel
2658
vein
874
epithelium
652
kidney
467
brain
450
connective tissue
386
musculature of body
311
lung
289
intestine
257
heart
244
limb
215
embryo
204
skin of body
193
pancreas
174
large intestine
151
liver
146
extraembryonic component
119
stomach
109
eye
87
adipose tissue
87
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
breast
13
pituitary gland
11
bone marrow
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Life stage
5016
adult
1386
embryonic
468
unknown
115
child
75
newborn
65
fetal
32
young adult
30
postnatal
Date released
2636
February, 2025
2585
February, 2021
2510
September, 2022
389
May, 2021
350
February, 2024
333
November, 2021
289
June, 2020
286
September, 2023
154
May, 2020
128
August, 2021
127
March, 2020
106
January, 2022
101
October, 2022
89
January, 2020
64
February, 2020
49
May, 2022
44
November, 2022
35
August, 2017
33
July, 2025
31
February, 2023
30
March, 2024
19
April, 2020
15
March, 2023
14
October, 2019
13
November, 2019
9
August, 2018
9
May, 2019
7
April, 2019
4
March, 2026
3
November, 2020
3
September, 2018
2
January, 2018
2
January, 2025
2
May, 2024
1
August, 2020
1
August, 2022
1
July, 2020
Software used
2507
macs
2331
r
1034
chromhmm
838
encode-ccres
250
abc
139
qTLtools
132
deltasvm
117
deseq2
27
chicago
27
nospecificsoft_customcode
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
hiccups
14
matrix-eQTL
12
deeptools
12
umitools
11
rasqual
9
salmon
8
fastqtl
6
eigenmt
5
cicero
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
Smooth_Muscle.narrowpeak.bed.gz Smooth_Muscle.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
Lab
9426
AMP-T2D consortium
Kyle Gaulton, UCSD
393
Bing Ren, UCSD
281
KPMP
139
Jesse Engreitz, Stanford University
98
Stephen Parker, UMich
53
Katalin Susztak, Upenn
24
Ines Cebola, Imperial College London
19
Xin Sun, UCSD
9
Anna Gloyn, Oxford
8
Struan F.A. Grant, CHOP
5
ITG
5
Patrick T. Ellinor, Broad
4
Doug Phanstiel, UNC
4
Joseph Wu, Stanford
4
Karen Mohlke, UNC
3
Stephen S. Rich Lab @UVA
Project
9817
AMP
333
ENCODE
281
KPMP
19
LungMap
17
community
5
ITG
3
T1D
Collection Tags
2635
UK_Biobank
2499
EpiMap
1846
ChIP-Atlas
966
ENCODE
642
DGA
533
AMP
393
T2DKP
365
T1D
281
KPMP
219
BLUEPRINT
174
4DN
151
GTEx
143
T2DKP
111
T2D