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Annotation type
5
caQTL
Annotation Category
5
Genetic variant effects
Annotation type Category
4
snATAC-seq
1
ATAC-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
tissue
Biosample term
1
endothelial cell
1
liver
mesenchymal stem cell
1
smooth muscle cell
1
type I muscle cell
1
type II muscle cell
Organ
2
musculature of body
1
epithelium
1
liver
Date released
4
October, 2022
1
May, 2022
Software used
2541
macs
2381
r
1032
chromhmm
836
encode-ccres
249
abc
147
qTLtools
136
deltasvm
133
deseq2
32
cicero
27
chicago
26
nospecificsoft_customcode
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
17
samtools
15
limix
14
hiccups
14
matrix-eQTL
11
deeptools
11
umitools
10
rasqual
9
salmon
8
fastqtl
5
eigenmt
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Lab
4
Stephen Parker, UMich
1
Karen Mohlke, UNC
Project
5
AMP
Collection Tags
5
DGA
4
T2DKP
1
AMP
RFA
4
AMP2
1
AMP
biosample_term_name!
mesenchymal stem cell
Showing 5 of 5 results
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Download
FileSet
DSR797VBE
released
Annotation file set
: caQTL annotation of liver tissue from pilot study(AJHG2021) in Mohlke Lab
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR273WHL
released
Annotation file set
: Chromatin site QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR085VQO
released
Annotation file set
: Chromatin site QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR375CST
released
Annotation file set
: Chromatin site QTLs of smooth muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP