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Citing CMDGA
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Embeddings type
3
Accessible chromatin
2
Gene expression
Cohort
1
HPAP
Embeddings Category
5
umap
Underlying Assay
2
10X snRNA-seq
2
sciATAC-seq
1
10X scATAC-seq
Available data
4
h5ad
2
mtx
2
tsv
1
rds
File set status
5
released
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
4
islet of Langerhans
pancreas
2
heart
2
peripheral blood mononuclear cell
1
tissues
Tissue term
2
heart
2
pancreas
1
tissues
Organ
lung
2
pancreas
1
heart
Life stage
1
adult
Date released
May, 2022
1
February, 2021
1
February, 2023
1
March, 2024
1
November, 2021
1
September, 2020
September, 2023
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Project
4
AMP
1
ENCODE
RFA
4
AMP
1
ENCODE3
biosample_term_name!
pancreas
tongue
month_released!
May, 2022
September, 2023
organ_slims!
lung
Showing 5 of 5 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR549TWY
released
Embeddings file set
: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP