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Schema
Citing CMDGA
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Embeddings type
3
Accessible chromatin
3
Gene expression
Embeddings Category
6
umap
Underlying Assay
3
10X snRNA-seq
2
10X snATAC-seq
1
sciATAC-seq
Available data
6
h5ad
3
mtx
3
tsv
1
bed bed3
1
cloupe
1
rds
1
tbi
File set status
6
released
Organism
6
Homo sapiens
Biosample type
6
tissue
Biosample term
3
islet of Langerhans
pancreas
2
lung
2
peripheral blood mononuclear cell
2
skeletal muscle tissue
1
heart
Tissue term
2
lung
2
skeletal muscle tissue
1
heart
1
pancreas
Organ
2
lung
2
musculature of body
1
pancreas
Life stage
adult
Date released
2
May, 2022
2
September, 2021
1
February, 2021
1
September, 2020
Lab
3
AMP-T2D consortium
2
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Project
4
AMP
2
LungMap
RFA
4
AMP
2
LungMap2
biosample_term_name!
pancreas
relevant_life_stage!
adult
Showing 6 of 6 results
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FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR514DTZ
released
Embeddings file set
: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP