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Getting started
Schema
Clear Filters
Annotation type
202
gene expression
162
target gene predictions
159
candidate regulatory elements
77
chromatin state
73
differential activity
50
accessible chromatin
16
variant allelic effects
7
binding sites
6
histone modifications
4
eQTL
Annotation Category
299
cis-regulatory elements
275
Gene expression levels
162
Target gene links
20
Genetic variant effects
Annotation type Category
369
DNase-seq
324
ChIP-seq
140
single cell RNA-seq
74
snDropSeq
26
RNA-seq
22
scRNA-seq
14
ATAC-seq
4
snATAC-seq
Available data
398
bed bed3+
251
tsv
87
txt
77
bed bed9
36
bigWig
2
bigBed bed9
File set status
756
released
Genome assembly (visualization)
387
hg19
192
GRCh38
Organism
756
Homo sapiens
Biosample type
371
tissue
335
primary cell
48
cell line
2
in vitro differentiated cells
Biosample term
95
kidney
52
right kidney
51
renal cortex interstitium
50
renal pelvis
45
left kidney
26
epithelial cell of proximal tubule
22
glomerular endothelial cell
16
left renal cortex interstitium
16
left renal pelvis
16
right renal pelvis
14
glomerular visceral epithelial cell
14
right renal cortex interstitium
12
kidney tubule cell
9
HEK293
9
kidney glomerular epithelial cell
9
renal cortical epithelial cell
8
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thick ascending limb epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
6
ACHN
6
Caki2
6
RCC 7860
6
kidney capillary endothelial cell
6
kidney connecting tubule epithelial cell
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
G401
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Renin-positive Juxtaglomerular Granular Cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
renal cell carcinoma
4
HEK293T
4
cortex of kidney
4
renal principal cell
3
S-shaped body
3
epithelial cell of distal tubule
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
renal intercalated cell
2
RCC
2
endothelial cell
2
kidney epithelium
2
kidney inner medulla collecting duct intercalated cell
2
leukocyte
2
metanephros
2
renal connecting tubule
2
ureteric bud
1
left kidney
1
HK-2
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
glomerular epithelium
1
kidney - cortex
1
kidney - medulla
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
nephron progenitor cell
1
nephron tubule
1
parietal epithelial cell
1
pericyte
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortex tubule
1
renal glomerulus
1
ureter
Organ
3365
blood
2902
vasculature
2861
blood vessel
2853
bodily fluid
2659
vein
952
epithelium
903
brain
756
kidney
518
connective tissue
488
heart
440
lung
386
musculature of body
358
intestine
319
pancreas
296
skin of body
244
limb
240
liver
226
large intestine
215
embryo
174
extraembryonic component
161
eye
142
adipose tissue
140
stomach
111
muscle organ
106
bone element
104
mammary gland
102
adrenal gland
97
placenta
97
small intestine
93
thymus
93
uterus
88
artery
87
prostate gland
73
ureter
64
gonad
64
penis
63
spleen
62
lymph node
60
__MARKER__
49
spinal cord
48
esophagus
47
thyroid gland
32
ovary
31
testis
25
nerve
24
lymphoid tissue
24
skeleton
21
lymphatic vessel
21
mouth
16
bronchus
15
breast
13
bone marrow
13
pituitary gland
13
urinary bladder
12
tongue
12
vagina
5
trachea
4
nose
1
embryonic structure
1
gallbladder
1
pericardium
Life stage
283
adult
258
embryonic
22
fetal
19
unknown
7
child
2
young adult
Date released
225
September, 2022
188
February, 2021
140
September, 2023
87
July, 2026
28
August, 2021
19
May, 2020
17
May, 2026
15
June, 2020
14
January, 2020
9
February, 2020
3
March, 2020
3
November, 2021
2
March, 2024
2
October, 2022
1
April, 2019
1
February, 2024
1
January, 2022
1
May, 2019
Software used
352
r
84
encode-ccres
79
chromhmm
58
macs
56
deseq2
16
deltasvm
12
seurat
3
matrix-eQTL
1
qTLtools
Lab