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Citing CMDGA
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Embeddings type
5
Accessible chromatin
Gene expression
Cohort
1
HPAP
Embeddings Category
5
umap
Underlying Assay
2
10X snATAC-seq
2
sciATAC-seq
1
10X scATAC-seq
Available data
4
h5ad
1
mtx
1
rds
1
tsv
File set status
5
released
Organism
4
Homo sapiens
Biosample type
4
tissue
1
primary cell
Biosample term
3
islet of Langerhans
1
lung
1
pancreas
1
peripheral blood mononuclear cell
1
tissues
Tissue term
3
pancreas
1
blood
1
lung
1
tissues
Organ
3
pancreas
1
blood
1
bodily fluid
1
lung
Date released
1
August, 2021
1
February, 2021
1
March, 2024
1
November, 2021
1
September, 2021
Lab
3
Kyle Gaulton, UCSD
AMP-T2D consortium
1
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
2
AMP
1
ENCODE
1
LungMap
1
T1D
RFA
2
AMP
1
ENCODE3
1
LungMap2
1
T1D
biosample_term_name!
skeletal muscle tissue
embeddings_type!
Gene expression
lab.title!
AMP-T2D consortium
tissue_term_name!
endothelial cell
Showing 5 of 5 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D