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Schema
Citing CMDGA
Clear Filters
Embeddings type
2
Gene expression
1
Accessible chromatin
Embeddings Category
3
umap
Underlying Assay
10X snATAC-seq
2
10X snRNA-seq
1
sciATAC-seq
Available data
3
h5ad
1
mtx
1
tsv
File set status
3
released
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
1
heart
1
lung
skeletal muscle tissue
1
tissues
Tissue term
pancreas
1
blood
1
heart
1
lung
1
tissues
Organ
1
lung
Life stage
adult
Date released
1
November, 2021
1
September, 2020
1
September, 2021
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
1
AMP
1
ENCODE
1
LungMap
RFA
1
AMP
1
ENCODE3
1
LungMap2
biosample_term_name!
skeletal muscle tissue
embeddings_underlying_assay!
10X snATAC-seq
relevant_life_stage!
adult
tissue_term_name!
pancreas
Showing 3 of 3 results
table-tab-icon
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FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR514DTZ
released
Embeddings file set
: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap