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Embeddings type
4
Gene expression
Embeddings Category
4
umap
Underlying Assay
28
10X scRNA-seq
Smart-seq
2
10X snRNA-seq
10X snATAC-seq
Available data
7
h5ad
mtx
3
tsv
1
rds
File set status
4
released
Organism
4
Homo sapiens
Biosample type
3
tissue
1
primary cell
Biosample term
1
heart
1
immune system
1
kidney
1
lung
Tissue term
pancreas
1
blood
1
heart
1
kidney
1
leukocyte
1
lung
Organ
1
kidney
1
lung
Life stage
2
adult
Date released
1
May, 2022
1
September, 2020
1
September, 2021
1
September, 2023
Lab
3
AMP-T2D consortium
1
Xin Sun, UCSD
Project
3
AMP
1
LungMap
RFA
3
AMP
1
LungMap2
biosample_term_name!
small intestine
embeddings_underlying_assay!
10X snATAC-seq
Smart-seq
files.file_type!
mtx
tissue_term_name!
pancreas
Showing 4 of 4 results
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FileSet
DSR772NPS
released
Embeddings file set
: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR996NUW
released
Embeddings file set
: The human cell atlas of all immune cells from 24 organs of 15 normal human subjects (22-74 years old) from Tabula Sapiens.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR514DTZ
released
Embeddings file set
: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap