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Getting started
Schema
Clear Filters
Annotation type
2638
pQTL
1705
candidate regulatory elements
1350
target gene predictions
977
histone modifications
943
chromatin state
915
accessible chromatin
817
binding sites
683
gene expression
467
differential activity
178
eQTL
139
variant allelic effects
74
Fine-mapped variants
18
caQTL
7
sQTL
5
hQTL
4
variant to gene
3
meQTL
3
other
1
representative DNase hypersensitivity sites
Annotation Category
5358
cis-regulatory elements
3067
Genetic variant effects
1350
Target gene links
1150
Gene expression levels
2
Others
Annotation type Category
5244
ChIP-seq
3061
DNase-seq
2638
quantitative proteomics
544
RNA-seq
507
ATAC-seq
441
snATAC-seq
305
single cell RNA-seq
189
HiC
147
scRNA-seq
139
H3K27ac ChIP-Seq
84
snDropSeq
47
pCHi-C
23
snRNA-seq
17
Expression arrays
5
Capture-C
4
RNA microarray
3
DNA methylation profiling by array assay
1
SNP-SELEX
Available data
6055
bed bed3+
3548
tsv
868
bed bed9
539
bigWig
112
txt
40
bigBed bed9
34
bed bed9+
26
csv
16
bigBed narrowPeak
11
bed bed3
11
bed narrowPeak
4
bam
3
bed gappedPeak
3
xls
File set status
10925
released
1
archived
1
revoked
Genome assembly (visualization)
6971
hg19
1904
GRCh38
4
hg18
Organism
10879
Homo sapiens
Biosample type
5286
tissue
2818
primary cell
2352
cell line
465
in vitro differentiated cells
4
stem cell
Biosample term
2636
whole blood
135
monocyte
92
heart
86
stomach
81
kidney
73
brain
71
endothelial cell
68
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
B cell
60
placenta
58
muscle of leg
56
large intestine
55
macrophage
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
CD8-positive, alpha-beta T cell
51
neural progenitor cell
48
thymus
47
liver
smooth muscle cell
45
T cell
45
adipocyte
45
fibroblast
45
islet of Langerhans
45
right lung
44
natural killer cell
43
hematopoietic multipotent progenitor cell
42
hepatocyte
42
right kidney
41
K562
40
renal cortex interstitium
40
renal pelvis
40
retina
36
left kidney
35
cardiac muscle cell
35
spinal cord
34
heart left ventricle
34
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
adipose tissue
31
pancreatic ductal cell
28
regulatory T cell
26
MCF-7
25
epithelial cell of proximal tubule
25
tibial nerve
24
body of pancreas
24
pericyte cell
23
EndoC_BH1
23
T-helper 1 cell
23
neuron
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
caudate nucleus
22
dendritic cell
22
foreskin keratinocyte
22
pancreas
21
T-helper 17 cell
21
glomerular endothelial cell
21
keratinocyte
21
trophoblast cell
20
breast cancer cell
20
coronary artery
20
mononuclear cell
20
ovary
20
pigmented layer of retina
20
psoas muscle
20
subcutaneous adipose tissue
19
astrocyte
19
endothelial cell of lymphatic vessel
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
heart right ventricle
19
right atrium auricular region
18
HFFc6
18
embryonic stem cell
18
gastrocnemius medialis
18
mast cell
18
mesenchymal stem cell
18
pancreatic beta cell
18
pericyte
18
thyroid gland
18
tibial artery
18
transverse colon
17
HepG2
17
T-helper 2 cell
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
pancreatic acinar cell
17
pancreatic alpha cell
17
testis
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
hepatic stellate cell
16
induced pluripotent stem cell
16
layer of hippocampus
16
retinal pigment epithelial cell
16
skeletal muscle myoblast
16
skeletal muscle satellite cell
16
skeletal muscle tissue
16
substantia nigra
15
CD4-positive, alpha-beta T cell
15
GM12878
15
ascending aorta
15
cerebellum
15
endocardial cell
15
frontal cortex
15
mammary gland epithelial cell
15
neutrophil
15
pancreatic delta cell
14
H9
14
endocrine pancreas
14
prostate gland
14
putamen
14
upper lobe of left lung
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
excitatory neuron
13
neurosphere
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
neuronal stem cell
11
Ammon's horn
11
breast epithelium
11
epithelial cell of prostate
11
erythroblast
11
glomerular visceral epithelial cell
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
kidney tubule cell
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
liposarcoma
9
pancreatic A cell
9
tongue
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
right renal cortex interstitium
8
skeletal muscle fiber
8
skin fibroblast
8
thoracic aorta
8
type B pancreatic cell
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
Organ
2905
vasculature
2853
bodily fluid
2845
blood vessel
2842
blood
2658
vein
960
epithelium
669
kidney
516
connective tissue
485
brain
384
musculature of body
364
heart
311
lung
301
pancreas
289
intestine
244
limb
215
embryo
204
skin of body
186
liver
174
large intestine
146
extraembryonic component
134
adipose tissue
119
stomach
109
eye
89
bone element
87
mammary gland
84
small intestine
83
uterus
80
artery
78
prostate gland
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
57
__MARKER__
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphatic vessel
24
lymphoid tissue
23
ovary
23
thyroid gland
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Life stage
5064
adult
1382
embryonic
467
unknown
115
child
75
newborn
65
fetal
32
young adult
30
postnatal
Date released
2636
February, 2025
2589
February, 2021
2508
September, 2022
388
May, 2021
368
February, 2024
321
November, 2021
303
May, 2026
289
June, 2020
286
September, 2023
155
May, 2020
128
August, 2021
128
March, 2020
106
January, 2022
96
October, 2022
89
January, 2020
70
March, 2023
64
February, 2020
56
January, 2021
46
May, 2022
44
November, 2022
38
May, 2024
35
August, 2017
32
February, 2023
30
July, 2025
30
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
9
August, 2018
9
May, 2019
8
April, 2019
4
March, 2026
3
November, 2020
3
September, 2018
2
January, 2018
2
January, 2025
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Software used
2548
macs
2382
r
1034
chromhmm
837
encode-ccres
244
abc
136
qTLtools
134
deltasvm
117
deseq2
36
cicero
27
chicago
27
nospecificsoft_customcode
25
seurat
24
gtex_eqtl:V8
24
gtex_finemapping_eQTL:caveman
24
gtex_finemapping_eQTL:caviar
24
gtex_finemapping_eQTL:dapg
17
samtools
15
limix
14
hiccups
14
matrix-eQTL
11
deeptools
11
umitools
10
rasqual
9
salmon
8
fastqtl
eigenmt
5
peer
5
unknown
3
mach2qtl
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
emmax
2
mpraflow
1
altius-index
1
bedops
1
betacells_cytokines_t1d
1
bimbam
1
cisgenome
1
e-range
1
epacts
1
fast-lmm
1
haploview
1
pepatac
1
probabel
1
snap
1
spp
Encyclopedia version
1
Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
1
Endothelial.narrowpeak.bed.gz Endothelial.consensus_summit_features.bed.gz
1
FAP.narrowpeak.bed.gz Mesenchymal_Stem_Cell.consensus_summit_features.bed.gz
1
Macrophage.narrowpeak.bed.gz Macrophage.consensus_summit_features.bed.gz
1
Neuromuscular_junction.narrowpeak.bed.gz Neuromuscular_junction.consensus_summit_features.bed.gz
1
Neuronal.narrowpeak.bed.gz Neuronal.consensus_summit_features.bed.gz
1
Satellite_Cell.narrowpeak.bed.gz Satellite_Cell.consensus_summit_features.bed.gz
1
T_cell.narrowpeak.bed.gz T_cell.consensus_summit_features.bed.gz
1
Type_1.narrowpeak.bed.gz Type_1.consensus_summit_features.bed.gz
1
Type_2a.narrowpeak.bed.gz Type_2a.consensus_summit_features.bed.gz
1
Type_2x.narrowpeak.bed.gz Type_2x.consensus_summit_features.bed.gz
Lab
9422
AMP-T2D consortium
483
Kyle Gaulton, UCSD
378
Bing Ren, UCSD
281
KPMP
139
Jesse Engreitz, Stanford University
87
Stephen Parker, UMich
53
Katalin Susztak, Upenn
24
Ines Cebola, Imperial College London
19
Xin Sun, UCSD
9
Anna Gloyn, Oxford
8
Struan F.A. Grant, CHOP
5
ITG
5
Patrick T. Ellinor, Broad
4
Doug Phanstiel, UNC
4
Joseph Wu, Stanford
3
Karen Mohlke, UNC
3
Stephen S. Rich Lab @UVA
Project
10224
AMP
321
ENCODE
281
KPMP
60
T1D
19
LungMap
17
community
5
ITG
Collection Tags