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Schema
Citing CMDGA
Clear Filters
Annotation type
2
variant allelic effects
Annotation Category
2
Genetic variant effects
Annotation type Category
2
DNase-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
64
heart
HeLa-S3
61
stomach
56
A549
54
brain
51
H1-hESC
51
lung
49
muscle of arm
48
small intestine
47
adrenal gland
46
kidney
44
placenta
42
muscle of leg
40
common myeloid progenitor, CD34-positive
40
large intestine
39
left lung
39
muscle of back
37
K562
36
liver
36
thymus
33
right lung
32
B cell
32
right kidney
31
hematopoietic multipotent progenitor cell
31
islet of Langerhans
28
renal cortex interstitium
28
renal pelvis
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
27
left kidney
26
monocyte
25
adipose tissue
24
heart left ventricle
24
spinal cord
21
CD8-positive, alpha-beta memory T cell
21
regulatory T cell
21
spleen
20
body of pancreas
20
neural progenitor cell
19
HFFc6
19
T-helper 1 cell
19
T-helper 17 cell
19
hepatocyte
19
tibial nerve
18
endothelial cell
17
MCF-7
17
T cell
17
caudate nucleus
17
coronary artery
17
macrophage
17
mononuclear cell
17
trophoblast cell
16
adipocyte
16
psoas muscle
16
sigmoid colon
15
T-helper 2 cell
15
heart right ventricle
15
ovary
15
right atrium auricular region
14
endothelial cell of umbilical vein
14
frontal cortex
14
natural killer cell
14
smooth muscle cell
14
thyroid gland
14
tibial artery
13
EndoC_BH1
13
cerebellum
13
fibroblast of lung
13
gastrocnemius medialis
13
subcutaneous adipose tissue
13
substantia nigra
12
GM12878
12
ascending aorta
12
chorionic villus
12
endocrine pancreas
12
fibroblast
12
foreskin keratinocyte
12
mesenchymal stem cell
12
muscle of trunk
12
omental fat pad
12
pancreatic ductal cell
12
transverse colon
11
CD8-positive, alpha-beta T cell
11
aorta
11
fibroblast of dermis
11
mammary gland epithelial cell
11
neutrophil
11
pancreas
11
pericyte cell
10
H9
10
fibroblast of cardiac tissue
10
retina
10
skeletal muscle myoblast
10
skeletal muscle tissue
10
testis
9
Ammon's horn
9
Peyer's patch
9
chorion membrane
9
foreskin fibroblast
9
keratinocyte
9
layer of hippocampus
9
left cardiac atrium
9
pancreatic delta cell
9
putamen
8
HepG2
8
SK-N-SH
8
angular gyrus
8
endometrium adenocarcinoma
8
extended pluripotent stem (EPS) cells
8
immortal human breast epithelial cell line cell
8
lymphocyte
8
naive T cell
8
pancreatic acinar cell
8
pituitary stalk
8
progenitor cell of endocrine pancreas
8
temporal lobe
8
upper lobe of left lung
7
astrocyte
7
breast epithelium
7
cardiac muscle cell
7
cingulate gyrus
7
colonic mucosa
7
dendritic cell
7
duodenal mucosa
7
embryonic stem cell
7
epithelial cell of proximal tubule
7
esophagus
7
pancreatic beta cell
7
thoracic aorta
6
22Rv1
6
Brodmann (1909) area 46
6
CD4-positive, alpha-beta T cell
6
LNCaP clone FGC
6
NAMALWA cell
6
SK-N-DZ
6
T47D
6
alternatively activated macrophage
6
amygdala
6
anterior cingulate cortex
6
bronchial epithelial cell
6
cardiomyocytes (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
colon epithelial cell
6
dermis blood vessel endothelial cell
6
dermis lymphatic vessel endothelial cell
6
epithelial cell of prostate
6
erythroblast
6
esophagus muscularis mucosa
6
esophagus squamous epithelium
6
eye
6
fibroblast of breast
6
hypothalamus
6
induced pluripotent stem cell
6
left renal cortex interstitium
6
left renal pelvis
6
lymphoblastoid cell line
6
mucosa of rectum
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neurosphere
6
pancreatic alpha cell
6
right lobe of liver
6
skeletal muscle satellite cell
6
trophoblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
GM19238
5
GM19239
5
GM19240
5
Glomerular Capillary Endothelial Cell
5
HCT116
Organ
2
brain
2
connective tissue
2
vasculature
Life stage
1
adult
Date released
2
May, 2020
Software used
macs
2
deltasvm
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_term_name!
HeLa-S3
month_released!
February, 2021
software_used.software.name!
macs
Showing 2 of 2 results
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Download
FileSet
DSR631MKV
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart cardiac fibroblast DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR529VUE
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart cardiac fibroblast adult DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP