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Schema
Citing CMDGA
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Annotation type
1
variant allelic effects
Annotation Category
1
Genetic variant effects
Annotation type Category
1
DNase-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
tissue
Biosample term
44
islet of Langerhans
41
liver
33
stomach
32
adipose tissue
31
kidney
30
adrenal gland
30
spleen
28
retina
26
heart left ventricle
25
tibial nerve
24
body of pancreas
23
sigmoid colon
22
caudate nucleus
22
pancreas
21
coronary artery
21
subcutaneous adipose tissue
20
pigmented layer of retina
20
psoas muscle
19
heart
19
right atrium auricular region
19
thyroid gland
19
tibial artery
19
transverse colon
18
gastrocnemius medialis
18
omental fat pad
18
substantia nigra
17
ovary
16
ascending aorta
16
cerebellum
16
frontal cortex
16
layer of hippocampus
16
skeletal muscle tissue
16
small intestine
16
upper lobe of left lung
15
endocrine pancreas
15
putamen
14
Peyer's patch
14
heart right ventricle
14
prostate gland
14
temporal lobe
13
testis
12
Ammon's horn
12
aorta
12
brain
12
lung
11
breast epithelium
11
esophagus muscularis mucosa
11
esophagus squamous epithelium
11
thoracic aorta
10
angular gyrus
10
colonic mucosa
10
esophagus
10
lower leg skin
10
thymus
10
vagina
9
cingulate gyrus
9
duodenal mucosa
9
mucosa of rectum
9
parathyroid adenoma
9
right lobe of liver
9
stomach smooth muscle
9
uterus
8
globus pallidus
8
midbrain
8
muscle layer of colon
8
muscle layer of duodenum
8
occipital lobe
7
amygdala
7
gastroesophageal sphincter
7
hypothalamus
7
left cardiac atrium
7
nucleus accumbens
7
right cardiac atrium
7
superior temporal gyrus
6
Brodmann (1909) area 46
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
6
medulla oblongata
6
middle frontal gyrus
6
placenta
6
pons
6
subcutaneous abdominal adipose tissue
5
C1 segment of cervical spinal cord
5
cartilage tissue
5
cerebellar cortex
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
urinary bladder
4
bone tissue
4
chorion membrane
4
cortex of kidney
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
inferior parietal cortex
4
mucosa of stomach
4
rectum smooth muscle tissue
4
visceral abdominal adipose tissue
3
dorsolateral prefrontal cortex
3
germinal center
3
large intestine
3
muscle of leg
3
prefrontal cortex
3
renal pelvis
3
skin of body
3
spinal cord
3
suprapubic skin
3
trophoblast
2
hindlimb muscle
2
muscle of leg
2
blood
2
breast carcinoma
2
endometrium cancer
2
fallopian tube
2
first pancreatic bud
2
kidney epithelium
2
left renal pelvis
2
mammary gland
2
middle frontal area 46
2
minor salivary gland
2
muscle of arm
2
pancreatic ductal cell
2
pancreatic stellate cell
2
pituitary gland
2
renal cortex interstitium
2
respiratory system smooth muscle
2
right renal pelvis
2
skeletal muscle
2
skin of forearm
2
skin of prepuce of penis
2
tissue
2
umbilical cord
1
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
aorta wall
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
embryonic facial prominence
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
eye
1
fetal heart
1
forelimb muscle
1
frontal pole
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
gyrus rectus
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
limb
1
locus ceruleus
1
medial dorsal nucleus of thalamus
medulloblastoma
1
metanephros
1
mid-frontal lobe
1
morula
1
muscle of trunk
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
Organ
1
kidney
Life stage
embryonic
Date released
1
May, 2020
Software used
1
deltasvm
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
biosample_term_name!
medulloblastoma
relevant_life_stage!
embryonic
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR468ICH
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP