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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
histone modifications
1
candidate regulatory elements
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
1
DNase-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
2
cell line
2
in vitro differentiated cells
1
primary cell
Biosample term
20
breast cancer cell
15
epithelial cell of proximal tubule
14
common myeloid progenitor, CD34-positive
13
glomerular endothelial cell
12
kidney
12
neuroblastoma cell
11
cardiomyocytes
11
gastric cancer cell
11
hematopoietic multipotent progenitor cell
10
diffuse intrinsic pontine glioma
9
Rhabdomyosarcoma
9
foreskin fibroblast
9
foreskin keratinocyte
9
islet of Langerhans
9
liposarcoma
9
mammary epithelial cell
8
CD4-positive, alpha-beta T cell
8
MCF-7
8
T-cell acute lymphoblastic leukemia
8
esophageal adenocarcinoma
8
induced pluripotent stem cell
8
keratinocyte
8
liver
8
neuroblastoma cell line
7
B cell
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta T cell
7
endothelial cell
7
fibroblast cell line
7
hESC cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
spleen
6
Chondroid Chordoma
6
acute myeloid leukemia
6
adrenal gland
6
bronchial epithelial cell
6
cardiac muscle cell
6
glioblastoma multiforme cancer stem cell
6
kidney interstitial cell
6
melanoma
6
natural killer cell
6
neuronal stem cell
6
osteoblast
6
stomach
5
A549
5
CD4-positive, alpha-beta memory T cell
5
Ewing sarcoma
5
adipocyte
5
adipose tissue
5
diffuse large B-cell lymphoma
5
embryonic stem cell
5
endothelial cell of umbilical vein
5
esophageal squamous cell carcinoma
5
foreskin melanocyte
5
glomerular visceral epithelial cell
5
hepatocyte
5
kidney loop of Henle thick ascending limb epithelial cell
5
neural progenitor cell
5
osteosarcoma
5
pancreas
5
prostate cancer cell line
4
22Rv1
4
CD14-positive monocyte
4
HS-SY-2 cell
4
HepG2
4
Jurkat
4
LNCAP
4
Mantle cell lymphoma
4
Peyer's patch
4
RS4-11 cell
4
Rh-4 cell
4
T-cell
4
Th1 cell
4
Tumor-derived cell line
4
WI38
4
body of pancreas
4
bone tissue
4
brain
4
colon adenocarcinoma
4
dermal fibroblast
4
dermis blood vessel endothelial cell
4
epithelial cell of prostate
4
erythroid progenitor cell
4
esophagus squamous epithelium
4
gastrocnemius medialis
4
gastroesophageal sphincter
4
glioblastoma cell
4
glioma cell
4
heart left ventricle
4
immortal neural cell line cell
4
kidney cortex collecting duct principal cell
4
layer of hippocampus
4
lower leg skin
4
lymphoblastoid cell line
4
melanoma cell
4
nephron progenitor
4
sigmoid colon
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
tracheal epithelial cell
4
triple-negative breast cancer
4
upper lobe of left lung
3
B-lymphocyte
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO-320 cell
3
COLO205
3
GM06990
3
GM12864
3
GM12865
3
GM12873
3
GM12875
3
GM12878
3
GM23248
3
HAP-1
3
HL-60
3
HT-29
3
Ishikawa
3
K562
3
LHCN-M2
3
MCF 10A
3
MG63
3
MM.1S
3
OCI-LY1
3
OCI-LY7
3
PC-3
3
PC-9
3
RKO
3
RPMI8226
3
RWPE1
3
S-shaped body
3
SK-N-DZ
3
SK-N-MC
3
SW480
3
T-helper 1 cell
3
WERI-Rb-1
3
adult endothelial progenitor cell
3
ascending aorta
3
breast epithelium
3
caudate nucleus
3
choroid plexus epithelial cell
3
chronic lymphocytic leukemia cell
3
colonic mucosa
3
dermis microvascular lymphatic vessel endothelial cell
3
endocrine pancreas
3
epithelial ovarian cancer cell
3
esophagus muscularis mucosa
3
fibroblast
3
fibroblast of cardiac tissue
3
fibroblast of lung
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
heart
3
hematopoietic cell
3
hepatic stellate cell
3
kidney cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
leukemic stem cell
3
lung
3
lung fibroblast cell line
3
lymphoblast
3
mesangial cell
3
mesenchymal stem cell
3
meso-epithelial cell
3
metastatic melanoma
3
mononuclear cell of bone marrow
3
myotube
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
ovary
3
pancreatic cell line
3
subcutaneous adipose tissue
2
143B
2
501A
2
697 cell
2
769-P cell
2
786-O cell
2
A-1847 cell
2
A-375 cell
2
A-498 cell
2
A-673 cell
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803
2
AG10803 cell
2
AGS cell
2
ALL-SIL cell
2
Adipose stromal cell
2
AsPC-1 cell
2
B-cell lymphoma cell
2
BCBL-1 cell
2
BE(2)-C
2
BEAS-2B cell
2
BG03
Organ
3
connective tissue
Life stage
1
adult
embryonic
Date released
5
February, 2021
3
February, 2024
3
September, 2022
2
June, 2020
1
March, 2020
1
May, 2021
1
May, 2022
1
October, 2019
1
October, 2022
Software used
4
macs
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
organ_slims!
placenta
relevant_life_stage!
embryonic
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337GCY
released
Annotation file set
: Histone modifications annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR743XZV
released
Annotation file set
: Histone modifications annotation for Kidney 786-O from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR959CJP
released
Annotation file set
: Binding sites annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR012XHI
released
Annotation file set
: Binding sites annotation for Kidney 786-O from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP