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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
binding sites
1
histone modifications
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
2
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
2
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
5
cell line
2
primary cell
Biosample term
53
HeLa-S3
47
heart
44
H1-hESC
41
kidney
40
brain
36
neural progenitor cell
36
stomach
35
muscle of arm
32
lung
32
muscle of leg
32
placenta
30
CD8-positive, alpha-beta T cell
30
fibroblast
30
large intestine
29
endothelial cell
29
macrophage
29
small intestine
28
muscle of back
27
monocyte
26
left lung
26
thymus
23
right lung
22
K562
22
renal cortex interstitium
22
renal pelvis
22
right kidney
21
adrenal gland
21
spinal cord
20
breast cancer cell
20
islet of Langerhans
20
pericyte cell
20
smooth muscle cell
19
HFFc6
19
adipocyte
18
left kidney
17
CD14-positive monocyte
17
embryonic stem cell
17
keratinocyte
17
liver
15
B cell
15
EndoC_BH1
15
cardiac muscle cell
15
endothelial cell of umbilical vein
15
foreskin fibroblast
14
H9
14
HepG2
14
hepatocyte
14
pancreatic ductal cell
14
retinal pigment epithelial cell
13
astrocyte
13
foreskin keratinocyte
13
heart left ventricle
12
T cell
12
excitatory neuron
12
lymphoblastoid cell line
12
neuroblastoma cell
12
trophoblast cell
11
CD4-positive, alpha-beta memory T cell
11
GM12878
11
erythroblast
11
osteoblast
11
retina
10
Rhabdomyosarcoma
10
gastric cancer cell
10
mesenchymal stem cell
10
neuronal stem cell
10
pancreatic acinar cell
10
regulatory T cell
9
bronchial epithelial cell
9
diffuse intrinsic pontine glioma
9
left cardiac atrium
9
liposarcoma
9
mammary epithelial cell
9
muscle of trunk
9
skeletal muscle myoblast
9
spleen
8
B-lymphoblastoid cell line
8
fibroblast cell line
8
pituitary stalk
7
CD4-positive helper T cell
7
CD4-positive, alpha-beta T cell
7
HEK293
7
IMR-90
7
Jurkat
7
MCF-7
7
choroid plexus epithelial cell
7
esophageal adenocarcinoma
7
fibroblast of cardiac tissue
7
heart right ventricle
7
left renal cortex interstitium
7
left renal pelvis
7
lymphocyte
7
mammary gland epithelial cell
7
mesendoderm
7
natural killer cell
7
pancreas
7
pancreatic beta cell
6
22Rv1
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
HUES8
6
PC-9
6
Rh-4 cell
6
SGBS preadipocytes
6
SK-N-MC
6
adipose tissue
6
chondrocyte
6
colon epithelial cell
6
epithelial cell of prostate
6
fibroblast of lung
6
foreskin melanocyte
6
hESC cell
6
iPSC derived cell line
6
induced pluripotent stem cell
6
neuroblastoma cell line
6
pancreatic delta cell
6
psoas muscle
6
right renal cortex interstitium
6
right renal pelvis
6
skeletal muscle satellite cell
6
testis
6
trophoblast
5
A549
5
AG04449 cell
5
AG04450 cell
5
BE(2)-C
5
BJ cell
5
CD1c-positive myeloid dendritic cell
5
CMK
5
CyT49
5
Ewing sarcoma
5
GM19240
5
HCT-116 cell
5
KARPAS-422 cell
5
MG63
5
NAMALWA cell
5
NT2-D1 cell
5
SK-N-DZ
5
SK-N-SH
5
T-cell acute lymphoblastic leukemia
5
T-helper 1 cell
5
T-helper 17 cell
5
acute myeloid leukemia
5
chorionic villus
5
coronary artery
5
enterocyte
5
neurosphere
5
neutrophil
5
osteosarcoma
5
ovary
5
pancreatic alpha cell
5
prostate cancer cell line
5
renal cortical epithelial cell
5
skeletal muscle fiber
5
skin fibroblast
5
smooth muscle cell of the coronary artery
5
type I muscle cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B-lymphocyte
4
COLO205
4
Caco-2 cell
4
Daoy
4
GM08714
4
GM12873
4
GM12875
4
GM12891
4
GM12892
4
GM18505
4
GM18507
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
H7-hESC
4
HAC cell
4
HAP-1
4
HBMEC cell
4
HL-60
4
HS-SY-2 cell
4
HT-29
4
HUES6
4
LNCAP
4
LoVo cell
4
MDA-MB-231 cell
4
MM.1S
4
Mantle cell lymphoma
4
NCCIT cell
4
NHEK
4
Normal Human Astrocytes
4
OCI-LY7
4
PANC-1 cell
4
RS4-11 cell
4
WERI-Rb-1
4
acute myeloid leukemia cell
4
aortic endothelial cell
4
common myeloid progenitor, CD34-positive
Organ
5
lung
2
blood vessel
2
epithelium
2
liver
2
vasculature
Life stage
adult
2
fetal
Date released
2
February, 2021
2
November, 2021
1
June, 2020
1
May, 2021
1
October, 2022
Software used
5
macs
1
abc
1
chromhmm
Lab
4
AMP-T2D consortium
2
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
5
AMP
2
ENCODE
RFA
5
AMP
2
ENCODE3
biosample_term_name!
duodenal mucosa
relevant_life_stage!
adult
software_used.software.name!
r
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR259UTD
released
Annotation file set
: Binding sites annotation for A549 (A549) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR947VGN
released
Annotation file set
: Accessible chromatin annotation of Fetal Hepatic Endothelial 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR698JKQ
released
Annotation file set
: Accessible chromatin annotation of Fetal Hepatic Endothelial 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR761KYR
released
Annotation file set
: Histone modifications annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR378GKW
released
Annotation file set
: Binding sites annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR510YWQ
released
Annotation file set
: enhancer-gene predicton of A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR008HJP
released
Annotation file set
: Accessible chromatin annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP