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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
gene expression
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
3
snATAC-seq
1
ATAC-seq
1
scRNA-seq
Available data
4
bed bed3+
4
bigWig
3
bigBed narrowPeak
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
18
hepatocyte
16
epithelial cell of proximal tubule
14
endothelial cell of hepatic sinusoid
13
glomerular endothelial cell
11
pigmented layer of retina
10
esophagus squamous epithelium
9
breast epithelium
9
endothelial cell
9
kidney tubule cell
8
myoepithelial cell of mammary gland
7
kidney glomerular epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
6
mammary gland epithelial cell
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Transitional Principal-Intercalated Cell
5
dermis blood vessel endothelial cell
5
glomerular visceral epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
pancreatic alpha cell
5
pancreatic beta cell
4
kidney connecting tubule epithelial cell
4
pancreatic delta cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
luminal epithelial cell of mammary gland
3
pancreatic polypeptide-secreting cell
2
kidney inner medulla collecting duct intercalated cell
2
mammary epithelial cell
2
pancreatic acinar cell
2
pancreatic ductal cell
2
renal principal cell
1
breast - mammary tissue
1
cholangiocyte
1
endothelial cell of coronary artery
1
esophagus - mucosa
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
nephron tubule
1
pancreatic endothelial cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortical epithelial cell
1
renal glomerulus
1
renal intercalated cell
0
A549
Organ
57
lung
5
epithelium
5
pancreas
Life stage
5
adult
1
unknown
Date released
2
February, 2021
1
February, 2024
1
May, 2021
1
October, 2019
Software used
2
macs
1
cicero
1
deltasvm
1
r
Lab
3
Kyle Gaulton, UCSD
2
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
month_released!
November, 2022
Showing 5 of 5 results
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Download
FileSet
DSR542DMU
released
Annotation file set
: GSE84133 Gene expression levels (pseudobulks UMI) of pancreatic alpha cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR110ITH
released
Annotation file set
: Pancreatic alpha cell accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR014OEB
released
Annotation file set
: pancreatic alpha cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR884MOQ
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic alpha cell snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR593VJK
released
Annotation file set
: pancreatic alpha cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP