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Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
2
binding sites
1
accessible chromatin
1
histone modifications
1
target gene predictions
Annotation Category
7
cis-regulatory elements
1
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
115
monocyte
86
heart
86
stomach
71
brain
71
kidney
68
lung
66
muscle of arm
64
HeLa-S3
63
small intestine
62
adrenal gland
60
placenta
57
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
neural progenitor cell
48
thymus
47
CD8-positive, alpha-beta T cell
46
liver
45
right lung
43
hematopoietic multipotent progenitor cell
41
K562
41
right kidney
40
islet of Langerhans
39
renal cortex interstitium
39
renal pelvis
38
B cell
36
left kidney
35
spinal cord
32
CD4-positive, alpha-beta memory T cell
32
spleen
31
CD14-positive monocyte
30
adipose tissue
30
heart left ventricle
27
endothelial cell
26
MCF-7
25
hepatocyte
25
regulatory T cell
24
adipocyte
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
body of pancreas
22
foreskin keratinocyte
22
retina
21
EndoC_BH1
21
T-helper 1 cell
21
epithelial cell of proximal tubule
21
macrophage
20
breast cancer cell
20
caudate nucleus
20
mononuclear cell
20
natural killer cell
20
ovary
20
psoas muscle
20
tibial nerve
19
T-helper 17 cell
19
foreskin fibroblast
19
glomerular endothelial cell
19
keratinocyte
18
HFFc6
18
embryonic stem cell
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
mesenchymal stem cell
18
pancreas
18
pancreatic ductal cell
18
thyroid gland
18
transverse colon
17
T cell
17
fibroblast
17
heart right ventricle
17
muscle of trunk
17
smooth muscle cell
17
substantia nigra
17
testis
16
HepG2
16
chorionic villus
16
fibroblast of lung
16
induced pluripotent stem cell
16
layer of hippocampus
16
subcutaneous adipose tissue
16
upper lobe of left lung
15
GM12878
15
coronary artery
15
mammary gland epithelial cell
15
neutrophil
15
skeletal muscle tissue
15
tibial artery
14
CD4-positive, alpha-beta T cell
14
H9
14
T-helper 2 cell
14
cardiac muscle cell
14
endocrine pancreas
14
fibroblast of cardiac tissue
14
omental fat pad
14
prostate gland
14
right atrium auricular region
14
skeletal muscle myoblast
13
Peyer's patch
13
aorta
13
ascending aorta
13
bronchial epithelial cell
13
neurosphere
13
osteoblast
12
cerebellum
12
fibroblast of dermis
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
11
breast epithelium
11
epithelial cell of prostate
11
frontal cortex
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
putamen
11
retinal pigment epithelial cell
11
temporal lobe
10
22Rv1
10
Ammon's horn
10
Rhabdomyosarcoma
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
left renal cortex interstitium
10
lymphocyte
10
neuronal stem cell
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
endothelial cell of hepatic sinusoid
9
esophagus
9
left renal pelvis
9
liposarcoma
9
pancreatic delta cell
9
parathyroid adenoma
9
pericyte cell
9
right renal pelvis
9
skin fibroblast
9
thoracic aorta
9
tongue
9
vagina
8
A549
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
choroid plexus epithelial cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle satellite cell
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
astrocyte
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
glomerular visceral epithelial cell
7
hepatic stellate cell
7
kidney tubule cell
7
mature neutrophil
7
pancreatic beta cell
7
stomach smooth muscle
Disease term
lung epithelial-myoepithelial carcinoma
Organ
8
lung
Life stage
3
adult
Date released
5
February, 2021
1
June, 2020
1
May, 2021
1
October, 2022
Software used
3
encode-ccres
3
macs
1
abc
1
chromhmm
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
disease_term_name!
lung epithelial-myoepithelial carcinoma
files.file_type!
bigWig
month_released!
February, 2020
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR259UTD
released
Annotation file set
: Binding sites annotation for A549 (A549) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR641NTB
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A549
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR496BBN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A549
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR885NAO
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A549
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR761KYR
released
Annotation file set
: Histone modifications annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR378GKW
released
Annotation file set
: Binding sites annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR510YWQ
released
Annotation file set
: enhancer-gene predicton of A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR008HJP
released
Annotation file set
: Accessible chromatin annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP