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Schema
Citing CMDGA
Clear Filters
Annotation type
3
gene expression
2
differential activity
1
accessible chromatin
Annotation Category
5
Gene expression levels
1
cis-regulatory elements
Annotation type Category
5
single cell RNA-seq
1
DNase-seq
Available data
5
tsv
1
bed bed3+
File set status
6
released
Genome assembly (visualization)
1
hg19
Organism
6
Homo sapiens
Biosample type
5
primary cell
1
tissue
Biosample term
81
kidney
42
right kidney
40
renal cortex interstitium
40
renal pelvis
36
left kidney
23
epithelial cell of proximal tubule
21
glomerular endothelial cell
13
glomerular visceral epithelial cell
12
left renal cortex interstitium
12
left renal pelvis
12
right renal pelvis
11
right renal cortex interstitium
10
kidney tubule cell
9
HEK293
8
kidney glomerular epithelial cell
8
renal cortical epithelial cell
7
kidney epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
5
ACHN
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Caki2
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
RCC 7860
5
Renin-positive Juxtaglomerular Granular Cell
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
renal cell carcinoma
4
G401
4
cortex of kidney
4
kidney connecting tubule epithelial cell
3
HEK293T
3
S-shaped body
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
2
kidney epithelium
2
kidney inner medulla collecting duct intercalated cell
2
metanephros
2
renal connecting tubule
2
renal principal cell
2
ureteric bud
1
left kidney
1
RCC
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
epithelial cell of distal tubule
1
glomerular epithelium
1
kidney - cortex
1
kidney - medulla
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
nephron tubule
1
parietal epithelial cell
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
Disease term
1
Acute kidney failure, unspecified
1
Chronic kidney disease (CKD)
1
acute kidney failure
1
chronic kidney disease
Organ
6
epithelium
6
kidney
Life stage
5
adult
Date released
5
September, 2023
1
June, 2020
Software used
3
r
2
deseq2
1
macs
Lab
5
KPMP
1
AMP-T2D consortium
Project
5
KPMP
1
AMP
RFA
5
KPMP
1
AMP
biosample_term_name!
kidney loop of Henle thin descending limb epithelial cell
Showing 6 of 6 results
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Download
FileSet
DSR441ISG
released
Annotation file set
: Differential activity annotation of Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell between CKD and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR708XZO
released
Annotation file set
: Differential activity annotation of Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell between AKI and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR168LGI
released
Annotation file set
: Gene expression annotation of Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell of healthy individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR273HUD
released
Annotation file set
: Gene expression annotation of Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell of CKD individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR821VQF
released
Annotation file set
: Gene expression annotation of Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell of AKI individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR160BWP
released
Annotation file set
: Accessible chromatin annotation for Kidney Kidney glomerular outgrowth from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP