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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
gene expression
2
target gene predictions
1
accessible chromatin
Annotation Category
4
Gene expression levels
2
Target gene links
1
cis-regulatory elements
Annotation type Category
4
RNA-seq
3
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
Available data
3
bed bed3+
2
tsv
File set status
7
released
Genome assembly (visualization)
3
hg19
Organism
7
Homo sapiens
Biosample type
3
primary cell
3
tissue
1
cell line
Biosample term
118
monocyte
34
CD8-positive, alpha-beta T cell
15
CD14-positive monocyte
15
EndoC_BH1
11
embryonic stem cell
10
pituitary stalk
6
dendritic cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
neutrophil
4
adipocyte
3
B cell
3
islet of Langerhans
2
BJAB cell
2
CD4-positive helper T cell
2
Jurkat
2
MCF 10A cell
2
T follicular helper cell
2
T-cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
THP-1
2
U937
2
adrenal gland
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell
2
gamma-delta T cell
2
macrophage
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive B cel
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
pancreatic acinar cell
2
pancreatic ductal cell
2
regulatory T cell
2
stomach
2
trophoblast cell
1
A549
1
A673
1
B cell, CD19-positive
1
CD56-positive, CD161-positive immature natural killer cell
1
GM12878
1
H1-hESC
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
HepG2
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
SK-N-SH
1
Schwann cell
1
activated pancreatic stellate cell
1
adipose tissue
1
astrocyte
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
cardiac fibroblast
1
cardiac muscle cell
1
cardiac muscle cell (pacemaker cell)
1
cardiac ventricle
1
cardiomyocytes (cardiac muscle cell)
1
common myeloid progenitor, CD34-positive
1
coronary artery
1
cytotoxic T cell
1
endothelial cell of umbilical vein
1
epithelial cell of prostate
1
erythroblast
1
fibroblast of arm
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
1
gastrocnemius medialis
1
hematopoietic multipotent progenitor cell
1
hepatocyte
1
iPS DF 19.11
1
induced pluripotent stem cell
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
keratinocyte
1
large intestine
1
liver
1
mammary epithelial cell
1
mast cell
1
megakaryocyte-erythroid progenitor cell
1
mesenchymal stem cell
1
mesendoderm
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
muscle of leg
1
muscle of trunk
1
myeloid dendritic cell
1
myotube
1
naive regulatory T cell
1
natural killer cell
1
neuronal stem cell
1
osteoblast
1
ovary
1
pancreas
1
pancreatic A cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic epsilon cell
1
pancreatic polypeptide-secreting cell
1
placenta
1
psoas muscle
1
quiescent pancreatic stellate cell
1
sigmoid colon
1
skeletal muscle myoblast
1
small intestine
1
smooth muscle cell
1
smooth muscle cell of the coronary artery
1
spinal cord
1
spleen
1
stem cell
1
thymus
1
thyroid gland
1
transverse colon
1
type B pancreatic cell
1
uterus
1
white adipose tissue
Organ
3
pancreas
1
prostate gland
Life stage
3
adult
Date released
25
September, 2022
20
February, 2021
8
August, 2021
7
May, 2021
6
March, 2023
6
May, 2020
4
June, 2020
4
November, 2021
3
January, 2022
3
March, 2020
2
August, 2017
2
February, 2024
1
April, 2019
1
April, 2020
January, 2018
1
January, 2020
1
November, 2019
Software used
4
r
2
abc
1
macs
Lab
5
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
month_released!
January, 2018
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR632ITR
released
Annotation file set
: RNA-seq of human islet pro-inflammatory cytokine exposure for GSE137136 (NO RAW DATA)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR357XYH
released
Annotation file set
: RNA-seq of human islet control for GSE137136 (NO RAW DATA)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR456JHZ
released
Annotation file set
: Accessible chromatin of ATAC-seq of human islet cytokine-treated for GSE123404
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR534CRD
released
Annotation file set
: GSE118165 gene expression annotation of normal B cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR630ZBK
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated B cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR563FIF
released
Annotation file set
: enhancer-gene predicton of LNCAP from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR143KXJ
released
Annotation file set
: enhancer-gene predicton of B_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP