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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
gene expression
2
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Gene expression levels
2
Target gene links
Annotation type Category
3
snATAC-seq
2
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
2
RNA-seq
Available data
5
bed bed3+
3
bigWig
2
tsv
File set status
7
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
6
primary cell
1
cell line
Biosample term
118
monocyte
36
CD8-positive, alpha-beta T cell
18
endothelial cell
18
fibroblast
18
pericyte cell
15
CD14-positive monocyte
15
EndoC_BH1
13
smooth muscle cell
12
excitatory neuron
12
macrophage
11
embryonic stem cell
10
astrocyte
10
pituitary stalk
6
B cell
6
colon epithelial cell
6
dendritic cell
6
erythroblast
6
pancreatic acinar cell
5
adipocyte
5
cortical cell of adrenal gland
5
inhibitory neuron
5
keratinocyte
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
neutrophil
5
pancreatic ductal cell
5
type II pneumocyte
4
T cell
4
blood vessel smooth muscle cell
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
islet of Langerhans
4
luminal epithelial cell of mammary gland
4
memory B cell
4
skeletal muscle satellite cell
4
smooth muscle cell of the esophagus
3
endocardial cell
3
endothelial cell of lymphatic vessel
3
enteric neuron
3
enterocyte
3
fibroblast of cardiac tissue
3
hepatocyte
3
mast cell
3
mesothelial cell
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
schwann cell
3
skeletal muscle fiber
3
type B pancreatic cell
3
type I pneumocyte
2
BJAB cell
2
CD4-positive helper T cell
2
CD4-positive, alpha-beta T cell
2
Jurkat
2
MCF 10A cell
2
Muller cell
2
T follicular helper cell
2
T-cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
THP-1
2
U937
2
adrenal gland
2
alveolar macrophage
2
basal cell
2
basal cell of epidermis
2
cardiac endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
colon goblet cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of hepatic sinusoid
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
gamma-delta T cell
2
granular cell of epidermis
2
intestinal tuft cell
2
luteal cell
2
mammary gland epithelial cell
2
mature NK T cell
2
mature natural killer cell
2
melanocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
microglial cell
2
myoepithelial cell
2
naive B cel
2
naive t cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
non keratinizing barrier epithelial cell
2
oligodendrocyte
2
paneth cell
2
parietal cell
2
peptic cell
2
plasma cell
2
regular atrial cardiac myocyte
2
regulatory T cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
skin fibroblast
2
small intestine goblet cell
2
stomach
2
stomach neuroendocrine cell
2
stromal cell
2
thyroid follicular cell
2
trophoblast cell
2
type I cell of adrenal cortex
2
type I muscle cell
2
type II cell of adrenal cortex
2
type II muscle cell
2
uterine smooth muscle cell
2
ventricular cardiac muscle cell
1
A549
1
A673
1
B cell, CD19-positive
1
CD56-positive, CD161-positive immature natural killer cell
1
GM12878
1
H1-hESC
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
HepG2
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
SK-N-SH
1
Schwann cell
1
activated pancreatic stellate cell
1
adipose tissue
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
cardiac fibroblast
1
cardiac muscle cell
1
cardiac muscle cell (pacemaker cell)
1
cardiac ventricle
1
cardiomyocytes (cardiac muscle cell)
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
common myeloid progenitor, CD34-positive
1
coronary artery
1
cytotoxic T cell
1
endothelial cell of umbilical vein
1
enteroendocrine cell
1
epithelial cell of prostate
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
1
gastric goblet cell
1
gastrocnemius medialis
1
glial cell
1
goblet cell
1
hematopoietic multipotent progenitor cell
1
hepatic stellate cell
1
hepatoblast
1
iPS DF 19.11
1
induced pluripotent stem cell
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
large intestine
1
liver
1
lung neuroendocrine cell
1
mammary epithelial cell
1
megakaryocyte
1
megakaryocyte-erythroid progenitor cell
1
mesenchymal stem cell
1
mesendoderm
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
metanephros
Organ
1
mammary gland
Date released
39
September, 2022
15
February, 2021
4
May, 2021
3
June, 2020
3
May, 2020
3
November, 2021
1
April, 2020
1
February, 2024
1
October, 2022
Software used
3
macs
2
abc
2
r
Lab
3
Bing Ren, UCSD
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
4
AMP
3
ENCODE
RFA
4
AMP
3
ENCODE3
biosample_term_name!
lymphocyte
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR995HIR
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 3 (NPY+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR143LGZ
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 2 (CXCR5+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR114OHW
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 1 (SPIB+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR534CRD
released
Annotation file set
: GSE118165 gene expression annotation of normal B cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR630ZBK
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated B cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR249DLQ
released
Annotation file set
: enhancer-gene predicton of MCF-7-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR143KXJ
released
Annotation file set
: enhancer-gene predicton of B_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP