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Citing CMDGA
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Annotation type
1
accessible chromatin
1
chromatin state
Annotation Category
2
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
6
adipocyte
4
endothelial cell
4
mesenchymal stem cell
4
skeletal muscle fiber
4
smooth muscle cell
4
type I muscle cell
4
type II muscle cell
2
ESC derived cell line
2
capillary endothelial cell
2
extracellular matrix secreting cell
2
glial cell
2
leukocyte
2
neural cell
2
skeletal muscle satellite cell
1
B cell
1
CD34-PB
1
GM12878
1
H1-hESC
1
HepG2
1
K562
1
T cell
1
basal cell
1
caudate nucleus
1
ciliated cell
1
cingulate gyrus
1
club cell
1
colonic mucosa
1
duodenal mucosa
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
endothelial cell of umbilical vein
1
erythrocyte
1
fibroblast of lung
1
islet of Langerhans
1
keratinocyte
1
layer of hippocampus
1
liver
1
macrophage
1
mammary epithelial cell
1
mid-frontal lobe
1
mucosa of rectum
1
myofibroblast cell
1
natural killer cell
1
neuroendocrine cell
1
pericyte cell
1
rectum smooth muscle tissue
1
skeletal muscle
1
skeletal muscle myoblast
1
stomach smooth muscle
1
subcutaneous adipose tissue
1
substantia nigra
1
temporal lobe
1
type I pneumocyte
1
type II pneumocyte
Organ
1
connective tissue
1
lung
Date released
1
April, 2020
1
August, 2017
Software used
1
chromhmm
Lab
53
AMP-T2D consortium
3
Bing Ren, UCSD
3
Kyle Gaulton, UCSD
2
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
1
Xin Sun, UCSD
Project
1
AMP
1
LungMap
RFA
1
AMP
1
LungMap2
Showing 2 of 2 results
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Download
FileSet
DSR608YQN
released
Annotation file set
: ATAC-seq peaks in B cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
TSTSR646989
released
Annotation file set
: ChromHMM 13-state model for fibroblast of lung
Lab:
Stephen Parker, UMich
Project:
AMP