Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
1
gene expression
1
target gene predictions
Annotation Category
5
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
5
snATAC-seq
1
ATAC-seq
1
snRNA-seq
Available data
6
bed bed3+
4
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
4
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
67
muscle of arm
58
muscle of leg
54
muscle of back
17
muscle of trunk
9
skeletal muscle fiber
8
psoas muscle
7
skeletal muscle satellite cell
7
skeletal muscle tissue
7
type I muscle cell
7
type II muscle cell
6
skeletal muscle cell
5
A673
5
SJCRH30
5
myotube
3
LHCN-M2
2
hindlimb muscle
2
muscle of leg
2
cardiac muscle myoblast
2
esophagus muscularis mucosa
2
forelimb muscle
2
gastrocnemius medialis
2
respiratory system smooth muscle
2
somatic muscle myotube
1
aortic smooth muscle cell
1
hindlimb muscle
1
rectum smooth muscle tissue
1
skeletal muscle
1
smooth muscle tissue
1
stomach smooth muscle
0
B cell
Organ
7
musculature of body
Life stage
adult
1
unknown
Date released
4
November, 2021
2
February, 2024
1
May, 2022
Software used
5
macs
1
abc
1
deeptools
1
r
1
samtools
1
umitools
Lab
4
Bing Ren, UCSD
2
Stephen Parker, UMich
1
AMP-T2D consortium
Project
4
ENCODE
3
AMP
RFA
4
ENCODE3
2
AMP2
1
AMP
organ_slims!
embryo
relevant_life_stage!
adult
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR534XMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of skeletal muscle satellite cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR920UVL
released
Annotation file set
: Target gene predictions of Satellite Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR116URN
released
Annotation file set
: Accessible chromatin annotation of Satellite Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR347TWG
released
Annotation file set
: Accessible chromatin annotation of Fetal Satellite Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR101HMU
released
Annotation file set
: Accessible chromatin annotation of Fetal Satellite Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR724QWN
released
Annotation file set
: Cell type chromatin broad peaks and bw of skeletal muscle satellite cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR919OZT
released
Annotation file set
: Cell type gene expression mean TPM and bw of skeletal muscle satellite cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP