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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
2
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
32
tissue
8
cell line
7
in vitro differentiated cells
6
primary cell
1
stem cell
Biosample term
31
neural progenitor cell
22
hematopoietic multipotent progenitor cell
18
adipocyte
14
embryonic stem cell
8
T-cell acute lymphoblastic leukemia
8
neuroblastoma cell line
8
neuronal stem cell
7
mesenchymal stem cell
6
dendritic cell
6
mesendoderm
6
retinal pigment epithelial cell
5
SGBS preadipocytes
5
cardiac muscle cell
5
chondrocyte
5
mesodermal cell
4
B cell
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
adipose-derived stem cell
4
bipolar neuron
4
cardiomyocytes (cardiac muscle cell)
4
colon adenocarcinoma
4
endodermal cell
4
rhabdomyosarcoma cell
3
esophageal adenocarcinoma
3
foreskin keratinocyte
3
foreskin melanocyte
3
iPS DF 4.7 Cell Line
3
mammary gland epithelial cell
3
neural cell
3
pancreatic ductal adenocarcinoma
3
trophoblast cell
2
BICR 31
2
CD4-positive helper T cell
2
CD8-Positive T-Lymphocytes
2
EAhy 926 cell
2
T-lymphoma cell line
2
Th1 cell
2
atypical teratoid rhabdoid tumor
2
cardiac myoblast
2
cardiac precursors (cardiac muscle cell)
2
cardiovascular progenitor cell
2
chronic myelomonocytic leukemia
2
colorectal adenocarcinoma
2
dermis microvascular lymphatic vessel endothelial cell
2
differentiating adipose-derived stem cell
2
diffuse intrinsic pontine glioma
2
diffuse large B-cell lymphoma
2
ectodermal cell
2
endometrial stromal cell
2
endometrial stromal tumor
2
endometriosis
2
epidermal stem cell
2
erythroid progenitor cell
2
fibroblast
2
hepatocyte
2
islet precursor cell
2
lymphocyte of B lineage (iPSC)
2
medulloblastoma cell line
2
muscle cell
2
myocyte
2
myotube
2
natural killer cell
2
neuroepithelial stem cell
2
neuron
2
olfactory neurosphere cell line
2
osteosarcoma
2
smooth muscle cell
1
Adipose SGBS cell line (adipocyte)
1
Barrett's epithelial cell line
1
CD8-positive, alpha-beta T cell
1
Chondroid Chordoma
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
Uveal Melanoma
1
cardiac mesoderm primordium
1
cardiac precursors
1
chondroblastoma
1
chronic lymphocytic leukemia
1
colon carcinoma
1
colonic adenoma cell
1
colorectal cancer
1
colorectal carcinoma
1
ecto neural progenitor cell
1
embryonic fibroblast
1
endometrioid carcinoma
1
ependymoma
1
erythroid cell
1
excitatory neuron
1
fibroblast-like synoviocyte
1
hESC cell
1
head and neck squamous cell carcinoma BICR 16
1
head and neck squamous cell carcinoma BICR 6
1
hematopoietic stem cell
1
hepatocellular carcinoma
1
hippocampal neuron
1
lower motor neuron
1
lymphoid progenitor cell
1
melanoma cell line
1
mid-neurogenesis radial glial cells
1
neuron cell of Hypothalamus (neuron)
1
radial glial cell
1
renal cell carcinoma
1
secretory cell
1
skeletal muscle myoblast
1
skin fibroblast
1
white adipose cell
0
B-lymphoblastoid cell line
Organ
7
connective tissue
Life stage
2
embryonic
1
adult
Date released
3
February, 2021
2
September, 2022
1
June, 2020
1
May, 2021
Software used
r
3
macs
2
chromhmm
1
abc
1
encode-ccres
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
software_used.software.name!
r
Showing 7 of 7 results
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Download
FileSet
DSR073XBJ
released
Annotation file set
: Chromatin states for BSS01261 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR718ELE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337GCY
released
Annotation file set
: Histone modifications annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR959CJP
released
Annotation file set
: Binding sites annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP