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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
56
brain
19
caudate nucleus
16
frontal cortex
14
cerebellum
14
substantia nigra
13
putamen
11
Ammon's horn
11
layer of hippocampus
10
pituitary stalk
10
temporal lobe
8
SK-N-SH
8
angular gyrus
7
SK-N-DZ
7
choroid plexus epithelial cell
7
cingulate gyrus
6
Brodmann (1909) area 46
6
amygdala
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
6
globus pallidus
6
hypothalamus
6
medulla oblongata
6
midbrain
6
nucleus accumbens
6
pons
5
cardiac fibroblast
5
BE(2)-C
5
SK-N-MC
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
middle frontal gyrus
4
A172
4
Daoy
4
M059J
4
brain microvascular endothelial cell
4
cerebellar cortex
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
inferior parietal cortex
3
H54
3
brain pericyte
3
medulloblastoma
2
U-87 MG
2
dorsolateral prefrontal cortex
2
hippocampal neuron
1
brain microvascular endothelial cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
cardiac fibroblast
1
cerebellar hemisphere
1
diencephalon
1
mid-frontal lobe
1
pituitary
1
pituitary gland
1
prefrontal cortex
1
undifferentiated ESC (H9 cell line)
Disease term
3
neuroblastoma
Organ
64
stomach
5
brain
Life stage
3
child
Date released
3
September, 2022
February, 2021
1
June, 2020
1
October, 2022
Software used
2
chromhmm
2
r
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
pigmented layer of retina
month_released!
February, 2021
Showing 5 of 5 results
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Download
FileSet
DSR032JQH
released
Annotation file set
: Binding sites annotation for BE(2)-C (BE2_C) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384UZS
released
Annotation file set
: Candidate regulatory elements for BSS00102 BE(2)-C from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR343OTF
released
Annotation file set
: Target gene predictions for BSS00102 BE(2)-C from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR703VXR
released
Annotation file set
: Chromatin states for BSS00102 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR420CEV
released
Annotation file set
: Accessible chromatin annotation for Neural BE(2)-C from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP