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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
57
heart
57
stomach
54
A549
48
brain
48
lung
48
muscle of arm
45
small intestine
42
adrenal gland
42
kidney
42
placenta
39
left lung
39
muscle of back
39
muscle of leg
38
large intestine
33
right lung
33
thymus
30
hematopoietic multipotent progenitor cell
30
right kidney
27
left kidney
27
renal cortex interstitium
27
renal pelvis
21
liver
21
spinal cord
18
K562
18
adipose tissue
18
spleen
15
MCF-7
15
heart left ventricle
15
sigmoid colon
12
body of pancreas
12
chorionic villus
12
endocrine pancreas
12
gastrocnemius medialis
12
muscle of trunk
12
neural progenitor cell
12
ovary
12
psoas muscle
12
thyroid gland
12
transverse colon
9
HeLa-S3
9
Peyer's patch
9
caudate nucleus
9
chorion membrane
9
endometrium adenocarcinoma
9
heart right ventricle
9
immortal human breast epithelial cell line cell
9
layer of hippocampus
9
retina
9
skeletal muscle tissue
9
testis
9
tibial nerve
9
upper lobe of left lung
7
HepG2
6
22Rv1
6
Brodmann (1909) area 46
6
LNCaP clone FGC
6
NAMALWA cell
6
SK-N-DZ
6
SK-N-SH
6
T47D
6
adipocyte
6
angular gyrus
6
aorta
6
ascending aorta
6
breast epithelium
6
cerebellum
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
duodenal mucosa
6
endodermal cell
6
esophagus
6
esophagus muscularis mucosa
6
esophagus squamous epithelium
6
eye
6
frontal cortex
6
left renal cortex interstitium
6
left renal pelvis
6
limb
6
lower leg skin
6
mesenchymal stem cell
6
mucosa of rectum
6
muscle cell
6
muscle layer of colon
6
muscle layer of duodenum
6
omental fat pad
6
pancreas
6
parathyroid adenoma
6
prostate gland
6
right atrium auricular region
6
right renal cortex interstitium
6
right renal pelvis
6
stomach smooth muscle
6
substantia nigra
6
temporal lobe
6
thoracic aorta
6
tibial artery
6
tongue
6
trophoblast
6
urinary bladder
6
vagina
3
8988T
3
A172
3
A673
3
ACC112
3
ACHN
3
AG04449 cell
3
AG04450 cell
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
Ammon's horn
3
BE(2)-C
3
BJ cell
3
C4-2B
3
CMK
3
COLO829
3
CWRU1
3
Caco-2 cell
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
ES-I3
3
G401
3
GM03348
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12875
3
GM12878
3
GM12891
3
GM12892
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
GM23248
3
GM23338
3
H1-hESC
3
H4
3
H54
3
H7-hESC
3
H9
3
HAP-1
3
HCT116
3
HEK293
3
HEK293T
3
HK-2 cell
3
HL-60
3
HPDE6-E6E7
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
HTR-8/Svneo
3
HUES48
3
HUES6
3
HUES64
3
HuH-7
3
HuH-7.5
3
IMR-90
3
KARPAS-422 cell
3
KBM-7
3
KMS-11
3
KOPT-K1
3
L1-S8
3
L1-S8R
3
LHCN-M2
LoVo cell
3
Loucy
3
M059J
3
MG63
3
MM.1S
3
NB4
3
NCI-H226 cell
3
NCI-H460 cell
3
NCI-H929
3
NT2-D1 cell
3
OCI-LY1
3
OCI-LY3
3
OCI-LY7
3
PC-3
3
PC-9
3
Panc1
3
RCC 7860
3
RPMI7951
3
RPMI8226
Life stage
3
newborn
Date released
10
May, 2021
7
February, 2021
3
September, 2022
1
June, 2020
1
March, 2020
1
November, 2022
1
October, 2022
Software used
2
r
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
LoVo cell
biosample_type!
primary cell
Showing 3 of 3 results
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Download
FileSet
DSR006UKO
released
Annotation file set
: Candidate regulatory elements for BSS00113 BJ cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR190OGJ
released
Annotation file set
: Target gene predictions for BSS00113 BJ cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR096DKH
released
Annotation file set
: Chromatin states for BSS00113 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP