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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
candidate regulatory elements
2
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
7
cis-regulatory elements
1
Target gene links
Annotation type Category
7
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
2
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
58
HeLa-S3
43
H1-hESC
29
K562
26
A549
20
breast cancer cell
19
HFFc6
16
MCF-7
15
EndoC_BH1
15
HepG2
14
GM12878
14
H9
12
lymphoblastoid cell line
12
neuroblastoma cell
11
gastric cancer cell
10
Rhabdomyosarcoma
10
pituitary stalk
9
fibroblast cell line
9
liposarcoma
8
B-lymphoblastoid cell line
8
diffuse intrinsic pontine glioma
8
induced pluripotent stem cell
8
lymphocyte
7
HEK293
7
IMR-90
7
Jurkat
7
iPSC derived cell line
7
melanoma
7
squamous cell lung carcinoma
6
22Rv1
6
GM06990
6
GM12864
6
GM12865
6
GM19240
6
HAP-1
6
HL-60
6
HT-29
6
HUES8
6
KARPAS-422 cell
6
LNCAP
6
MM.1S
6
OCI-LY7
6
PC-9
6
Rh-4 cell
6
SK-N-DZ
6
SK-N-MC
6
SK-N-SH
6
WERI-Rb-1
6
acute myeloid leukemia
6
glioblastoma multiforme cancer stem cell
6
hESC cell
6
prostate cancer cell line
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CMK
5
Caco-2 cell
5
Chondroid Chordoma
5
CyT49
5
Ewing sarcoma
5
GM12875
5
GM19238
5
GM19239
5
GM23248
5
HCT-116 cell
5
LHCN-M2
5
LoVo cell
5
MG63
5
NAMALWA cell
5
NT2-D1 cell
5
PC-3
5
RPMI8226
5
RS4-11 cell
5
RWPE1
5
SW480
5
U937
5
WI38
5
dermal fibroblast
5
esophageal adenocarcinoma
5
esophageal squamous cell carcinoma
5
fibroblast of cardiac tissue
5
glioblastoma cell
5
melanoma cell
5
osteosarcoma
5
synovial sarcoma cell
5
triple-negative breast cancer
4
COLO205
4
Daoy
4
GM08714
4
GM10248
4
GM10266
4
GM12873
4
GM12891
4
GM12892
4
GM18505
4
GM18507
4
GM19099
4
GM19193
4
H7-hESC
4
HAC cell
4
HBMEC cell
4
HCT116
HS-SY-2 cell
4
HUES6
4
HuH-7
4
KBM-7
4
MDA-MB-231 cell
4
Mantle cell lymphoma
4
NCCIT cell
4
NHEK
4
Normal Human Astrocytes
4
OCI-LY1
4
PANC-1 cell
4
RKO
4
SAEC
4
SJSA1
4
SK-N-SH_RA
4
T-47D cell
4
Tumor-derived cell line
4
U-266 cell
4
U-87 MG
4
U2OS
4
WI-38 cell
4
cardiac muscle cell
4
esophageal epithelial cell
4
glioma cell
4
immortal neural cell line cell
4
keratinocyte
4
lung fibroblast cell line
4
macrophage
4
metastatic melanoma
4
neural progenitor cell
4
pancreatic cell line
4
spinal cord
3
786-O cell
3
A-673 cell
3
A172
3
A673
3
ACHN
3
BJAB cell
3
COLO-320 cell
3
Caki2
3
D341 Med cell
3
DND-41 cell
3
ECC-1
3
G-401 cell
3
GM04503
3
GM04504
3
GM10847
3
GM12801
3
GM12872
3
GM12874
3
GM13976
3
GM13977
3
GM18526
3
GM18951
3
GM20000
3
H4
3
HEK293-T-REx cell
3
HK-2 cell
3
HUES64
3
HeLa cell
3
Kasumi-1
3
L1-S8
3
LNCaP clone FGC
3
M059J
3
MCF 10A
3
MCF 10A cell
3
MCF10A-Er-Src cell
3
MOLM-13 cell
3
Myoblasts
3
NB-4 cell
3
NB4
3
NHBE cell
3
NHDF cell
3
OCI-AML3
3
OCI-LY3
3
PA-TU-8988T cell
3
Panc1
3
RCC 7860
3
REH cell
3
RPMI7951
3
Raji cell
3
SH-SY5Y cell
3
SJCRH30
3
SK-MEL-5
3
SUDHL5
3
Saos-2 cell
3
T47D
3
THP-1
3
VCaP cell
3
Z-138
3
ZR-75-1 cell
3
cardiac myocyte cell derived cell line
3
choroid plexus epithelial cell
3
colon cancer cell line
3
diffuse large B-cell lymphoma
Disease term
2
neuroblastoma
Organ
6
brain
Life stage
2
child
2
young adult
Date released
4
February, 2021
2
September, 2022
1
May, 2021
1
October, 2022
Software used
r
3
chromhmm
2
encode-ccres
2
macs
1
abc
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_term_name!
HS-SY-2 cell
software_used.software.name!
r
Showing 8 of 8 results
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Download
FileSet
DSR744HBG
released
Annotation file set
: Binding sites annotation for SK-N-SH (SK-N-SH) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR392IHQ
released
Annotation file set
: Chromatin states for BSS01571 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR829TQG
released
Annotation file set
: Chromatin states for BSS01562 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR955YDG
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE SK-N-SH
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR096VBD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE SK-N-SH
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR128VWL
released
Annotation file set
: Histone modifications annotation for Breast BT-549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR272VBX
released
Annotation file set
: Binding sites annotation for Breast BT-549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR266GVV
released
Annotation file set
: enhancer-gene predicton of SK-N-SH-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP