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Citing CMDGA
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Annotation type
1
caQTL
1
candidate regulatory elements
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
DNase-seq
1
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
16
endothelial cell of hepatic sinusoid
14
endothelial cell of umbilical vein
5
cardiac fibroblast
5
Afferent / Efferent Arteriole Endothelial Cell
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Glomerular Capillary Endothelial Cell
5
Lymphatic Endothelial Cell
5
Peritubular Capillary Endothelial Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
fibroblast of pulmonary artery
4
choroid plexus epithelial cell
4
dermis blood vessel endothelial cell
4
endothelial cell of lymphatic vessel
4
pancreatic endothelial cell
4
pulmonary artery endothelial cell
4
vascular associated smooth muscle cell
3
smooth muscle cell of the brain vasculature
3
smooth muscle cell of the coronary artery
2
brain microvascular endothelial cell
2
capillary endothelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
endothelial cell of coronary artery
2
fibroblast of the aortic adventitia
2
kidney capillary endothelial cell
2
lung microvascular endothelial cell
1
brain microvascular endothelial cell
1
aortic endothelial cell
1
aortic smooth muscle cell
1
cardiac fibroblast
1
placental villus capillary endothelial cell
0
CD14-positive monocyte
Organ
2
blood vessel
2
connective tissue
2
vasculature
Life stage
1
unknown
Date released
September, 2022
1
February, 2021
1
February, 2023
Software used
1
encode-ccres
1
rasqual
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
month_released!
September, 2022
Showing 2 of 2 results
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Download
FileSet
DSR077AGV
released
Annotation file set
: Chromatin accessibility QTLs in fibroblasts passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR761GFE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE fibroblast of the aortic adventitia
Lab:
AMP-T2D consortium
Project:
AMP