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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
eQTL
1
accessible chromatin
1
chromatin state
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
2
RNA-seq
1
ChIP-seq
1
DNase-seq
Available data
1
bed bed3+
1
bed bed9
1
bigBed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
GRCh38
2
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
7
macrophage
6
lymphoblastoid cell line
4
brain
4
islet of Langerhans
3
cardiac fibroblast
3
blood cell
3
heart left ventricle
3
monocyte
3
pancreas
3
putamen
3
skin of body
2
SGBS preadipocytes
2
T cell
2
adipose tissue
2
aorta
2
cardiac muscle cell
2
caudate nucleus
2
cerebellum
2
coronary artery
2
endothelial cell of umbilical vein
2
fibroblast
2
frontal cortex
2
heart
2
iPSC derived cell line
2
kidney
2
muscle
2
regulatory T cell
2
right atrium auricular region
2
subcutaneous adipose tissue
2
substantia nigra
2
tibial artery
2
tibial nerve
1
hindlimb muscle
1
Ammon's horn
1
Leydig cell
1
T follicular helper cell
1
T-helper 1 cell
1
T-helper 17 cell
1
T-helper 2 cell
1
abdominal aorta artery
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adrenal gland
1
amygdala
1
anterior cingulate cortex
1
ascending aorta
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
brain pericyte
1
breast
1
cell
1
cerebellar cortex
1
cerebellar hemisphere
1
choroid plexus epithelial cell
1
colon sigmoid
1
cortex
1
cortex of kidney
1
dorsolateral prefrontal cortex
1
epithelial cell of proximal tubule
1
esophagus
1
esophagus mucosa
1
esophagus muscularis mucosa
1
excitatory neuron
1
fat cell
1
fetal heart
1
forelimb muscle
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
heart right ventricle
1
helper T cell
1
hepatic stellate cell
1
hepatocyte
1
hippocampal neuron
1
hypothalamus
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
layer of hippocampus
1
left cardiac atrium
1
left renal pelvis
1
liver
1
lower motor neuron
1
lung
1
microglial cell
1
middle frontal gyrus
1
minor salivary gland
1
muscle of arm
1
muscle of leg
1
naive B cel
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell
1
neutrophil
1
nucleus accumbens
1
occipital lobe
1
omental fat pad
1
ovary
1
pituitary gland
1
placenta
1
pons
1
prostate gland
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal pelvis
1
retina
1
retinal pigment epithelial cell
1
right cardiac atrium
1
right renal pelvis
1
sensory neuron
1
skeletal muscle cell
1
small intestine
1
smooth muscle cell of the brain vasculature
1
spinal cord
1
spleen
1
stomach
1
superior temporal gyrus
1
testis
1
thyroid gland
1
transverse colon
1
uterus
1
vagina
1
visceral abdominal adipose tissue
Organ
4
brain
Life stage
2
fetal
Date released
25
February, 2021
16
September, 2022
3
May, 2020
3
May, 2022
2
January, 2020
2
January, 2022
2
November, 2021
1
June, 2020
1
November, 2019
Software used
2
qTLtools
1
chromhmm
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
software_used.software.name!
r
Showing 4 of 4 results
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Download
FileSet
DSR191XXQ
released
Annotation file set
: brain naive eQTL of studay ROSMAP from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR999BSN
released
Annotation file set
: brain eQTL of studay BrainSeq from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR833MWK
released
Annotation file set
: ChromHMM 15-state model for fetal brain male from ENCODE ChIP-seq data. ROADMAP fetal brain male
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR271FEH
released
Annotation file set
: Accessible chromatin annotation of brain fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP