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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
snATAC-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
29
endothelial cell
29
fibroblast
21
macrophage
21
pericyte cell
20
smooth muscle cell
15
CD14-positive monocyte
13
adipocyte
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
10
astrocyte
10
hepatocyte
10
pituitary stalk
9
pancreatic acinar cell
9
pancreatic alpha cell
9
pancreatic beta cell
9
pancreatic delta cell
9
pancreatic ductal cell
8
B cell
8
T cell
8
kidney
7
dendritic cell
7
endothelial cell of lymphatic vessel
7
keratinocyte
7
natural killer cell
7
skeletal muscle fiber
7
type II pneumocyte
6
CD8-positive, alpha-beta T cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
erythroblast
6
mast cell
5
CD4-positive helper T cell
5
basal cell
5
endocardial cell
5
inhibitory neuron
5
left cardiac atrium
5
myofibroblast cell
5
pancreatic stellate cell
5
skeletal muscle satellite cell
5
type I muscle cell
5
type II muscle cell
4
blood vessel smooth muscle cell
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
islet of Langerhans
4
liver
4
luminal epithelial cell of mammary gland
4
memory B cell
4
mesenchymal stem cell
4
mesothelial cell
4
pancreatic A cell
4
pancreatic polypeptide-secreting cell
4
smooth muscle cell of the esophagus
4
type B pancreatic cell
4
type I pneumocyte
3
Schwann cell
3
ciliated cell
3
club cell
3
enteric neuron
3
fibroblast of cardiac tissue
3
goblet cell
3
mammary gland epithelial cell
3
megakaryocyte
3
monocyte
3
neuronal stem cell
3
oligodendrocyte precursor cell
3
parietal cell
3
peptic cell
3
schwann cell
3
thyroid follicular cell
2
BJAB cell
2
CD4-positive, alpha-beta T cell
2
ESC derived cell line
2
GM12878
2
H1-hESC
2
HepG2
2
Jurkat
2
K562
2
MCF 10A cell
2
Muller cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adrenal gland
2
alveolar macrophage
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle cell
2
cholangiocyte
2
colon goblet cell
2
conventional dendritic cell
2
eccrine cell
2
endothelial cell of umbilical vein
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of esophagus
2
erythrocyte
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of lung
2
foveolar cell of stomach
2
glial cell
2
granular cell of epidermis
2
hepatic stellate cell
2
intestinal tuft cell
2
luteal cell
2
mammary epithelial cell
2
mature NK T cell
2
melanocyte
2
mesangial cell
2
microglial cell
2
myoepithelial cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
oligodendrocyte
2
paneth cell
2
plasma cell
2
plasmacytoid dendritic cell
2
regular atrial cardiac myocyte
2
regular ventricular cardiac myocyte
2
regulatory T cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
skeletal muscle myoblast
2
skin fibroblast
2
small intestine goblet cell
2
stellate neuron
2
stomach
2
stomach neuroendocrine cell
2
stromal cell
2
trophoblast cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
uterine smooth muscle cell
2
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
A549
1
A673
1
B cell, CD19-positive
1
CD34-PB
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
SK-N-SH
1
Satellite Cells, Skeletal Muscle
1
adipose tissue
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
bronchial goblet cell
1
cardiac ventricle
1
cartilage tissue
1
caudate nucleus
1
cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
cingulate gyrus
1
colonic mucosa
1
common myeloid progenitor, CD34-positive
1
coronary artery
1
duodenal mucosa
1
endothelial cell of artery
1
enteroendocrine cell
1
epithelial cell of prostate
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of dermis
1
foreskin fibroblast
Date released
2
November, 2021
Software used
1
abc
1
macs
Lab
AMP-T2D consortium
2
Bing Ren, UCSD
Project
2
ENCODE
RFA
2
ENCODE3
lab.title!
AMP-T2D consortium
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR550FOW
released
Annotation file set
: Target gene predictions of T lymphocyte 2 (CD4+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR058FXX
released
Annotation file set
: Accessible chromatin annotation of T lymphocyte 2 (CD4+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE