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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
histone modifications
2
target gene predictions
1
accessible chromatin
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
2
ATAC-seq
2
H3K27ac ChIP-Seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
primary cell
7
cell line
Biosample term
69
heart
67
stomach
65
kidney
60
HeLa-S3
55
brain
52
lung
51
H1-hESC
51
muscle of arm
48
adrenal gland
48
small intestine
46
neural progenitor cell
46
placenta
43
A549
43
large intestine
43
muscle of leg
41
islet of Langerhans
41
muscle of back
40
liver
39
left lung
37
retina
37
thymus
34
right lung
33
K562
33
hematopoietic multipotent progenitor cell
32
right kidney
31
renal cortex interstitium
31
renal pelvis
28
spleen
27
left kidney
27
spinal cord
26
heart left ventricle
25
adipose tissue
23
EndoC_BH1
21
tibial nerve
20
MCF-7
20
body of pancreas
20
breast cancer cell
20
pigmented layer of retina
20
subcutaneous adipose tissue
19
HFFc6
18
pancreas
17
caudate nucleus
17
coronary artery
17
ovary
17
right atrium auricular region
17
sigmoid colon
16
induced pluripotent stem cell
15
H9
15
adipocyte
15
omental fat pad
15
psoas muscle
15
substantia nigra
15
transverse colon
14
HepG2
14
gastrocnemius medialis
14
testis
14
thyroid gland
14
tibial artery
13
GM12878
13
frontal cortex
13
heart right ventricle
13
putamen
13
skeletal muscle tissue
13
upper lobe of left lung
12
ascending aorta
12
cerebellum
12
layer of hippocampus
12
lymphoblastoid cell line
12
muscle of trunk
12
neuroblastoma cell
12
prostate gland
11
Ammon's horn
11
chorionic villus
11
embryonic stem cell
10
Peyer's patch
10
Rhabdomyosarcoma
10
cardiac muscle cell
10
endocrine pancreas
10
gastric cancer cell
10
left renal cortex interstitium
10
progenitor cell of endocrine pancreas
10
right renal pelvis
9
cardiomyocytes
diffuse intrinsic pontine glioma
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
mesenchymal stem cell
8
22Rv1
8
B-lymphoblastoid cell line
8
aorta
8
breast epithelium
8
esophagus
8
fibroblast cell line
8
pituitary stalk
8
trophoblast
7
HAP-1
7
HEK293
7
HT-29
7
IMR-90
7
Jurkat
7
MM.1S
7
NAMALWA cell
7
OCI-LY7
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
lower leg skin
7
mesendoderm
7
neuronal stem cell
7
temporal lobe
7
thoracic aorta
6
CMK
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM19240
6
GM23248
6
HL-60
6
HUES8
6
KARPAS-422 cell
6
LHCN-M2
6
LNCAP
6
LoVo cell
6
MG63
6
PC-9
6
RWPE1
6
Rh-4 cell
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
endometrium adenocarcinoma
6
eye
6
globus pallidus
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
nucleus accumbens
6
occipital lobe
6
pancreatic ductal cell
6
parathyroid adenoma
6
right renal cortex interstitium
6
tongue
6
uterus
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
Caco-2 cell
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM10248
5
GM10266
5
GM12875
5
GM18507
5
GM19238
5
GM19239
5
H7-hESC
5
HCT116
5
HUES6
5
HuH-7
5
KBM-7
5
LNCaP clone FGC
5
OCI-LY1
5
PC-3
5
RPMI8226
5
SGBS preadipocytes
5
SJSA1
5
SK-N-DZ
5
SK-N-MC
5
SW480
5
WI38
5
chorion membrane
5
cingulate gyrus
5
colonic mucosa
5
endodermal cell
5
limb
5
osteosarcoma
5
prostate cancer cell line
5
right lobe of liver
5
urinary bladder
5
vagina
4
A172
4
A673
4
ACHN
4
B cell
4
Brodmann (1909) area 46
4
COLO205
4
Caki2
Date released
4
February, 2021
2
May, 2021
1
June, 2020
Software used
5
macs
2
abc
Lab
5
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
biosample_term_name!
diffuse intrinsic pontine glioma
biosample_type!
primary cell
software_used.software.name!
chromhmm
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR596VGM
released
Annotation file set
: Histone modifications annotation for Blood Jurkat_BRACKETLClone_E6-1BRACKETR from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR613LTL
released
Annotation file set
: Histone modifications annotation for Blood Jurkat from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR648MAF
released
Annotation file set
: Binding sites annotation for Blood Jurkat_BRACKETLClone_E6-1BRACKETR from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR191DOZ
released
Annotation file set
: Binding sites annotation for Blood Jurkat from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR670BGX
released
Annotation file set
: enhancer-gene predicton of Jurkat_anti-CD3_PMA_4hr-Engreitz from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR028TMR
released
Annotation file set
: enhancer-gene predicton of Jurkat-Engreitz from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR240TUP
released
Annotation file set
: Accessible chromatin annotation for Blood Jurkat from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP