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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
Available data
1
bed bed3+
1
bigWig
1
tsv
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
primary cell
1
in vitro differentiated cells
Biosample term
66
heart
65
stomach
61
HeLa-S3
58
kidney
52
brain
51
muscle of arm
50
lung
47
small intestine
46
adrenal gland
45
H1-hESC
45
placenta
44
A549
43
large intestine
43
muscle of leg
41
muscle of back
39
left lung
38
neural progenitor cell
37
thymus
35
K562
35
retina
34
right lung
32
hematopoietic multipotent progenitor cell
32
liver
31
renal cortex interstitium
31
renal pelvis
31
right kidney
27
left kidney
27
spinal cord
26
spleen
24
heart left ventricle
21
MCF-7
20
adipose tissue
20
breast cancer cell
20
pigmented layer of retina
19
HFFc6
18
adipocyte
18
pancreas
17
sigmoid colon
16
HepG2
15
GM12878
15
H9
15
islet of Langerhans
15
ovary
15
psoas muscle
14
gastrocnemius medialis
14
tibial nerve
14
transverse colon
13
body of pancreas
13
thyroid gland
13
upper lobe of left lung
12
EndoC_BH1
12
coronary artery
12
heart right ventricle
12
layer of hippocampus
12
muscle of trunk
12
neuroblastoma cell
12
testis
11
Peyer's patch
11
caudate nucleus
11
chorionic villus
10
Rhabdomyosarcoma
10
cardiac muscle cell
10
embryonic stem cell
10
endocrine pancreas
10
gastric cancer cell
10
prostate gland
10
right renal pelvis
10
skeletal muscle tissue
9
diffuse intrinsic pontine glioma
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
mesenchymal stem cell
9
tibial artery
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
IMR-90
8
breast epithelium
8
fibroblast cell line
8
left cardiac atrium
8
pituitary stalk
8
right atrium auricular region
8
temporal lobe
8
trophoblast
7
GM06990
7
GM12864
7
GM12865
7
GM19240
7
HAP-1
7
HL-60
7
HT-29
7
Jurkat
7
MM.1S
7
NAMALWA cell
7
OCI-LY7
7
PC-9
7
SK-N-DZ
7
SK-N-MC
7
aorta
7
colonic mucosa
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
lower leg skin
7
mesendoderm
7
neuronal stem cell
7
omental fat pad
7
substantia nigra
7
thoracic aorta
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
Ammon's horn
6
BE(2)-C
6
BJ cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19238
6
GM19239
6
GM23248
6
HUES8
6
KARPAS-422 cell
6
LHCN-M2
6
LNCAP
6
LoVo cell
6
MG63
6
NT2-D1 cell
6
PC-3
6
RWPE1
6
Rh-4 cell
6
SGBS preadipocytes
6
SK-N-SH
6
ascending aorta
6
chondrocyte
6
cingulate gyrus
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
hESC cell
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
parathyroid adenoma
6
tongue
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM18507
5
H7-hESC
5
HCT-116 cell
5
HCT116
5
HUES6
5
HuH-7
5
KBM-7
5
LNCaP clone FGC
5
OCI-LY1
5
RPMI8226
5
SJSA1
5
SW480
5
WERI-Rb-1
5
WI38
5
chorion membrane
5
endodermal cell
5
frontal cortex
5
limb
5
lymphoblastoid cell line
5
mucosa of rectum
5
osteosarcoma
5
prostate cancer cell line
5
putamen
5
right renal cortex interstitium
5
urinary bladder
4
A172
4
A673
4
ACHN
4
B cell
4
Brodmann (1909) area 46
4
COLO205
4
Caki2
4
GM04503
4
GM04504
4
GM12873
4
GM18505
4
GM19099
4
GM19193
4
H4
4
HAC cell
4
HBMEC cell
4
HK-2 cell
4
HS-SY-2 cell
Life stage
1
unknown
Date released
1
January, 2022
Software used
1
macs
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
biosample_type!
primary cell
Showing 1 of 1 results
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Download
FileSet
DSR371MQC
released
Annotation file set
: Accessible chromatin annotation from ATAC-seq_iPSC-induced cortical excitatory neurons; Homo sapiens; ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP