Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
Annotation Category
4
cis-regulatory elements
2
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
primary cell
1
stem cell
Biosample term
55
HeLa-S3
51
H1-hESC
43
islet of Langerhans
39
kidney
38
neural progenitor cell
33
heart
31
retina
29
stomach
27
liver
25
brain
23
EndoC_BH1
23
K562
21
subcutaneous adipose tissue
20
adrenal gland
20
breast cancer cell
20
lung
20
pigmented layer of retina
19
HFFc6
19
heart left ventricle
19
muscle of arm
19
muscle of leg
18
placenta
18
small intestine
17
adipocyte
17
embryonic stem cell
17
large intestine
16
induced pluripotent stem cell
16
spleen
15
muscle of back
15
tibial nerve
14
adipose tissue
14
coronary artery
14
pancreas
14
spinal cord
14
thymus
13
GM12878
13
H9
13
caudate nucleus
13
hematopoietic multipotent progenitor cell
13
left lung
13
renal cortex interstitium
13
renal pelvis
12
lymphoblastoid cell line
12
neuroblastoma cell
12
right atrium auricular region
12
right lung
12
substantia nigra
11
MCF-7
11
body of pancreas
11
omental fat pad
11
putamen
11
tibial artery
10
HepG2
10
Rhabdomyosarcoma
10
cardiomyocytes
10
frontal cortex
10
gastric cancer cell
10
progenitor cell of endocrine pancreas
10
right kidney
9
Ammon's horn
9
ascending aorta
9
diffuse intrinsic pontine glioma
9
heart right ventricle
9
liposarcoma
9
ovary
9
testis
8
A549
8
B-lymphoblastoid cell line
8
cardiomyocytes (cardiac muscle cell)
8
cerebellum
8
fibroblast cell line
8
left cardiac atrium
8
pituitary stalk
7
Jurkat
7
T-cell acute lymphoblastic leukemia
7
amygdala
7
aorta
7
cardiac muscle cell
7
chondrocyte
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
neuronal stem cell
7
temporal lobe
6
Chondroid Chordoma
6
HEK293
6
HUES8
6
IMR-90
6
LNCAP
6
Rh-4 cell
6
SGBS preadipocytes
6
acute myeloid leukemia
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
hESC cell
6
hypothalamus
6
iPSC derived cell line
6
left kidney
6
lymphocyte
6
neuroblastoma cell line
6
nucleus accumbens
6
pancreatic ductal cell
6
sigmoid colon
6
upper lobe of left lung
5
C1 segment of cervical spinal cord
5
CyT49
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
GM19240
5
HAP-1
5
HCT-116 cell
5
HL-60
5
HT-29
5
KARPAS-422 cell
5
MM.1S
5
OCI-LY7
5
PC-9
5
Peyer's patch
5
RS4-11 cell
5
SK-N-MC
5
U937
5
WERI-Rb-1
5
mesendoderm
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
right lobe of liver
5
transverse colon
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B cell
4
BE(2)-C
4
BJ cell
4
CMK
4
COLO205
4
Caco-2 cell
4
GM12873
4
GM12875
4
GM18505
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
GM23248
4
HAC cell
4
HBMEC cell
4
HS-SY-2 cell
4
LHCN-M2
4
LoVo cell
4
MDA-MB-231 cell
4
MG63
4
Mantle cell lymphoma
4
NCCIT cell
4
NHEK
4
NT2-D1 cell
4
Normal Human Astrocytes
4
PANC-1 cell
4
PC-3
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
RKO
4
RPMI8226
4
RWPE1
4
SAEC
4
SK-N-DZ
SK-N-SH
4
SK-N-SH_RA
4
SW480
4
T-47D cell
4
U-266 cell
4
U2OS
4
WI-38 cell
4
WI38
4
adipose-derived stem cell
4
bone tissue
4
breast epithelium
4
cartilage tissue
4
cerebellum (Hemisphere)
4
diffuse large B-cell lymphoma
4
esophageal squamous cell carcinoma
4
esophagus squamous epithelium
4
fibroblast of cardiac tissue
4
gastrocnemius medialis
4
layer of hippocampus
4
left renal cortex interstitium
4
left renal pelvis
4
macrophage
4
psoas muscle
4
right renal pelvis
4
skeletal muscle tissue
4
squamous cell lung carcinoma
4
synovial sarcoma cell
4
thyroid gland
4
triple-negative breast cancer
4
uterus
3
786-O cell
Life stage
1
embryonic
Date released
3
February, 2021
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
biosample_term_name!
SK-N-SH
biosample_type!
primary cell
month_released!
September, 2022
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP