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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
accessible chromatin
2
caQTL
1
histone modifications
Annotation Category
3
Target gene links
3
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
5
ATAC-seq
3
DNase-seq
2
H3K27ac ChIP-Seq
1
Capture-C
1
ChIP-seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
6
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
5
primary cell
2
in vitro differentiated cells
1
stem cell
Biosample term
110
monocyte
66
heart
65
stomach
61
HeLa-S3
58
kidney
52
brain
51
muscle of arm
50
lung
47
CD8-positive, alpha-beta T cell
47
small intestine
46
adrenal gland
45
H1-hESC
45
placenta
44
A549
43
large intestine
43
muscle of leg
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
39
neural progenitor cell
37
thymus
35
K562
35
retina
34
B cell
34
right lung
32
hematopoietic multipotent progenitor cell
32
liver
31
endothelial cell
31
renal cortex interstitium
31
renal pelvis
31
right kidney
30
fibroblast
27
CD14-positive monocyte
27
left kidney
27
spinal cord
26
spleen
24
heart left ventricle
23
CD4-positive, alpha-beta memory T cell
23
macrophage
22
adipocyte
22
hepatocyte
22
smooth muscle cell
21
MCF-7
21
pericyte cell
20
adipose tissue
20
breast cancer cell
20
pigmented layer of retina
19
HFFc6
19
keratinocyte
18
foreskin keratinocyte
18
pancreas
17
T cell
17
foreskin fibroblast
17
sigmoid colon
17
trophoblast cell
16
HepG2
16
cardiac muscle cell
16
islet of Langerhans
16
natural killer cell
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
GM12878
15
H9
15
ovary
15
psoas muscle
15
retinal pigment epithelial cell
14
astrocyte
14
endothelial cell of umbilical vein
14
gastrocnemius medialis
14
mesenchymal stem cell
14
mononuclear cell
14
pancreatic ductal cell
14
tibial nerve
14
transverse colon
13
body of pancreas
13
fibroblast of cardiac tissue
13
osteoblast
13
thyroid gland
13
upper lobe of left lung
12
CD4-positive, alpha-beta T cell
12
EndoC_BH1
12
coronary artery
12
excitatory neuron
12
fibroblast of lung
12
heart right ventricle
12
layer of hippocampus
12
mammary epithelial cell
12
muscle of trunk
12
neuroblastoma cell
12
pancreatic beta cell
12
testis
11
T-helper 1 cell
11
caudate nucleus
11
chorionic villus
11
endothelial cell of hepatic sinusoid
11
mammary gland epithelial cell
11
skeletal muscle myoblast
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
embryonic stem cell
10
endocrine pancreas
10
gastric cancer cell
10
neuronal stem cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
prostate gland
10
right renal pelvis
10
skeletal muscle tissue
9
T-helper 2 cell
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
erythroblast
9
fibroblast of dermis
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
neurosphere
9
pancreatic delta cell
9
skeletal muscle satellite cell
9
skin fibroblast
9
tibial artery
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
breast epithelium
8
choroid plexus epithelial cell
8
fibroblast cell line
8
left cardiac atrium
8
pituitary stalk
8
right atrium auricular region
8
temporal lobe
8
trophoblast
7
CD4-positive helper T cell
7
GM06990
7
GM12864
7
GM12865
7
GM19240
7
HAP-1
7
HT-29
7
IMR-90
7
Jurkat
7
T-helper 17 cell
7
aorta
7
colonic mucosa
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
kidney tubule cell
7
lower leg skin
7
mesendoderm
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neutrophil
7
omental fat pad
7
substantia nigra
7
thoracic aorta
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
Ammon's horn
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19238
6
GM19239
6
GM23248
6
HUES8
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
ascending aorta
6
chondrocyte
6
cingulate gyrus
6
colon epithelial cell
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
fibroblast of pulmonary artery
6
hESC cell
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
parathyroid adenoma
5
cardiac fibroblast
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM18507
5
H7-hESC
Organ
1
brain
Date released
2
May, 2021
2
October, 2022
1
February, 2021
1
February, 2024
1
June, 2020
1
September, 2023
Software used
2
abc
2
macs
2
matrix-eQTL
1
bedops
1
chicago
1
pepatac
Lab
3
Stephen S. Rich Lab @UVA
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Struan F.A. Grant, CHOP
Project
5
AMP
3
T1D
RFA
4
AMP
3
T1D
1
AMP2
biosample_term_name!
common myeloid progenitor, CD34-positive
organ_slims!
tongue
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR204EGG
released
Annotation file set
: A canonical set of CD4+ T cell peaks
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR365EBN
released
Annotation file set
: Histone modifications annotation for Blood CD4+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645VYT
released
Annotation file set
: enhancer-gene predicton of CD4-positive_helper_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR397ZRH
released
Annotation file set
: enhancer-gene predicton of CD4-positive_helper_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR209TYC
released
Annotation file set
: Accessible chromatin annotation for Blood CD4+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP