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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
caQTL
2
target gene predictions
1
accessible chromatin
Annotation Category
2
Genetic variant effects
2
Target gene links
1
cis-regulatory elements
Annotation type Category
5
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
2
in vitro differentiated cells
Biosample term
130
monocyte
54
common myeloid progenitor, CD34-positive
49
CD8-positive, alpha-beta T cell
43
B cell
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
31
CD14-positive monocyte
30
macrophage
28
regulatory T cell
24
pericyte cell
23
T-helper 1 cell
23
natural killer cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
smooth muscle cell
20
T-helper 17 cell
20
mononuclear cell
18
trophoblast cell
17
T-helper 2 cell
17
astrocyte
17
osteoblast
16
fibroblast of lung
16
foreskin fibroblast
16
skeletal muscle myoblast
15
CD4-positive, alpha-beta T cell
15
neutrophil
14
naive thymus-derived CD4-positive, alpha-beta T cell
13
neurosphere
13
skeletal muscle satellite cell
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
11
erythroblast
10
hepatic stellate cell
9
mast cell
9
mature neutrophil
9
memory B cell
9
naive T cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
skeletal muscle fiber
9
skin fibroblast
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glutamatergic neuron
8
pancreatic stellate cell
7
CD1c-positive myeloid dendritic cell
7
cardiac muscle cell
7
mesenchymal stem cell
7
type I muscle cell
7
type II muscle cell
6
T-cell
6
adipocyte
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
foreskin melanocyte
6
gamma-delta T cell
6
myofibroblast cell
6
naive B cell
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
plasma cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Fibroblast
5
M2 Macrophage
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Vascular Smooth Muscle Cell / Pericyte
5
alternatively activated macrophage
5
basal cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
gabaergic neuron
5
inhibitory neuron
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
inflammatory macrophage
4
kidney interstitial cell
4
leukocyte
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesangial cell
4
nephron progenitor
4
neuronal stem cell
4
pancreatic MUC5B+ductal cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
stromal cell of bone marrow
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
Schwann cell
3
Th1 cell
3
Th17 cell
3
activated CD8-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
blood cell
3
bone marrow cell
3
brain pericyte
3
ciliated cell
3
enteric neuron
3
erythroid cell
3
glial cell
3
mammary epithelial cell
3
mammary stem cell
3
microglial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cel
3
naive regulatory T cell
3
naive t cell
3
neoplastic cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic quiescent stellate cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
regular cardiac myocyte
3
schwann cell
3
smooth muscle cell of the coronary artery
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
Kupffer cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Th2 cell
2
alveolar macrophage
2
articular chondrocyte
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
colon goblet cell
2
columnar chondrocyte
2
conventional dendritic cell
2
effector memory CD4-positive, alpha-beta T cell
2
erythrocyte
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
fat cell
2
fetal cardiomyocyte
2
head and neck squamous cell carcinoma
2
intestinal tuft cell
2
leukemic stem cell
2
luteal cell
2
mantle cell lymphoma cell
2
mature NK T cell
2
melanocyte
2
myeloid dendritic cell
2
natural killer cell mediated cytotoxicity
2
neural cell
2
neuron
2
non-classical monocyte
2
pancreatic endocrine cell
2
peripheral blood-derived erythroblast
2
primordial germ cell
Date released
2
May, 2021
2
October, 2022
1
February, 2024
Software used
2
abc
2
matrix-eQTL
1
bedops
1
pepatac
Lab
3
Stephen S. Rich Lab @UVA
2
Jesse Engreitz, Stanford University
Project
3
T1D
2
AMP
RFA
3
T1D
2
AMP
files.file_type!
txt
organ_slims!
epithelium
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR204EGG
released
Annotation file set
: A canonical set of CD4+ T cell peaks
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR645VYT
released
Annotation file set
: enhancer-gene predicton of CD4-positive_helper_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR397ZRH
released
Annotation file set
: enhancer-gene predicton of CD4-positive_helper_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP