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Getting started
Schema
Clear Filters
Annotation type
2
accessible chromatin
2
caQTL
2
target gene predictions
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
2
Target gene links
Annotation type Category
5
ATAC-seq
3
DNase-seq
2
H3K27ac ChIP-Seq
1
ChIP-seq
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
5
primary cell
2
in vitro differentiated cells
Biosample term
2636
whole blood
131
monocyte
90
heart
86
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
59
liver
58
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
CD8-positive, alpha-beta T cell
51
neural progenitor cell
48
thymus
47
B cell
47
endothelial cell
45
islet of Langerhans
45
right lung
43
hematopoietic multipotent progenitor cell
42
right kidney
41
K562
41
macrophage
40
renal cortex interstitium
40
renal pelvis
40
retina
38
hepatocyte
36
left kidney
35
fibroblast
35
spinal cord
34
heart left ventricle
34
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
adipocyte
31
adipose tissue
30
smooth muscle cell
28
regulatory T cell
26
MCF-7
26
natural killer cell
26
subcutaneous adipose tissue
25
pancreatic ductal cell
25
tibial nerve
24
T cell
24
body of pancreas
24
pericyte cell
23
EndoC_BH1
23
T-helper 1 cell
23
epithelial cell of proximal tubule
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
caudate nucleus
22
foreskin keratinocyte
22
pancreas
21
T-helper 17 cell
21
glomerular endothelial cell
21
keratinocyte
21
trophoblast cell
20
breast cancer cell
20
coronary artery
20
mononuclear cell
20
ovary
20
pigmented layer of retina
20
psoas muscle
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
heart right ventricle
19
mesenchymal stem cell
19
right atrium auricular region
18
HFFc6
18
embryonic stem cell
18
gastrocnemius medialis
18
pancreatic beta cell
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
17
HepG2
17
T-helper 2 cell
17
astrocyte
17
cardiac muscle cell
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
pancreatic acinar cell
17
pancreatic alpha cell
17
testis
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
induced pluripotent stem cell
16
layer of hippocampus
16
retinal pigment epithelial cell
16
skeletal muscle myoblast
16
skeletal muscle satellite cell
16
skeletal muscle tissue
15
CD4-positive, alpha-beta T cell
15
GM12878
15
ascending aorta
15
cerebellum
15
frontal cortex
15
mammary gland epithelial cell
15
neutrophil
15
pancreatic delta cell
14
H9
14
endocrine pancreas
14
prostate gland
14
putamen
14
upper lobe of left lung
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
excitatory neuron
13
neurosphere
13
temporal lobe
12
Ammon's horn
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
neuronal stem cell
11
breast epithelium
11
epithelial cell of prostate
11
erythroblast
11
glomerular visceral epithelial cell
11
hepatic stellate cell
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
kidney tubule cell
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
skeletal muscle
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
liposarcoma
9
parathyroid adenoma
9
tongue
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mast cell
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
skin fibroblast
8
thoracic aorta
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
Date released
2
May, 2021
2
October, 2022
1
February, 2021
1
February, 2024
1
June, 2020
Software used
2
abc
2
macs
2
matrix-eQTL
1
bedops
1
pepatac
Lab
3
Stephen S. Rich Lab @UVA
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
4
AMP
3
T1D
Collection Tags
3
T1D
2
ChIP-Atlas
2
DGA
RFA
4
AMP
3
T1D
type!!!
Biosample
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR204EGG
released
Annotation file set
: A canonical set of CD4+ T cell peaks
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR365EBN
released
Annotation file set
: Histone modifications annotation for Blood CD4+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645VYT
released
Annotation file set
: enhancer-gene predicton of CD4-positive_helper_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR397ZRH
released
Annotation file set
: enhancer-gene predicton of CD4-positive_helper_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR209TYC
released
Annotation file set
: Accessible chromatin annotation for Blood CD4+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP