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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
Annotation Category
3
Target gene links
1
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
2
snATAC-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
15
CD14-positive monocyte
11
pancreatic alpha cell
11
pancreatic beta cell
11
pancreatic delta cell
10
pancreatic ductal cell
10
pituitary stalk
9
pancreatic acinar cell
9
pancreatic stellate cell
6
dendritic cell
5
pancreatic endothelial cell
4
CD8-positive, alpha-beta T cell
4
adipocyte
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
3
endothelial cell
3
macrophage
3
monocyte
3
natural killer cell
3
pancreatic quiescent stellate cell
2
BJAB cell
2
CD4-positive helper T cell
2
Jurkat
2
MCF 10A cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adrenal gland
2
conventional dendritic cell
2
islet of Langerhans
2
megakaryocyte
2
memory B cell
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
pancreatic A cell
2
plasmacytoid dendritic cell
2
regulatory T cell
2
stellate neuron
2
stomach
2
trophoblast cell
2
type B pancreatic cell
1
A549
1
A673
1
B cell
1
B cell, CD19-positive
1
CD56-positive, CD161-positive immature natural killer cell
1
GM12878
1
H1-hESC
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
HepG2
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Pancreatic islets
1
SK-N-SH
1
Schwann cell
1
adipose tissue
1
astrocyte
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
cardiac muscle cell
1
cardiac ventricle
1
common myeloid progenitor, CD34-positive
1
coronary artery
1
endothelial cell of umbilical vein
1
epithelial cell of prostate
1
erythroblast
1
fibroblast of arm
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
1
gastrocnemius medialis
1
hepatocyte
1
iPS DF 19.11
1
induced pluripotent stem cell
1
keratinocyte
1
large intestine
1
liver
1
mammary epithelial cell
1
megakaryocyte-erythroid progenitor cell
1
mesenchymal stem cell
1
mesendoderm
1
muscle of leg
1
muscle of trunk
1
myotube
1
neuronal stem cell
1
osteoblast
1
ovary
1
pancreas
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic immune cell
1
placenta
1
psoas muscle
1
purified protein and synthetic DNA oligo binding assay
1
sigmoid colon
1
skeletal muscle myoblast
1
small intestine
1
smooth muscle cell of the coronary artery
1
spinal cord
1
spleen
1
thymus
1
thyroid gland
1
tissue-resident macrophage
1
transverse colon
1
uterus
1
white adipose tissue
Date released
2
January, 2021
2
May, 2021
Software used
2
abc
1
cicero
1
macs
Lab
57
AMP-T2D consortium
5
Bing Ren, UCSD
2
Jesse Engreitz, Stanford University
2
Kyle Gaulton, UCSD
1
Katalin Susztak, Upenn
Project
2
AMP
2
T1D
RFA
2
AMP
2
T1D
biosample_term_name!
GM12865
Showing 4 of 4 results
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Download
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D