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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
snATAC-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
11
pancreatic alpha cell
11
pancreatic beta cell
pancreatic delta cell
9
pancreatic ductal cell
9
pancreatic stellate cell
8
pancreatic acinar cell
6
endothelial cell
5
macrophage
5
natural killer cell
5
pancreatic endothelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
3
B cell
3
endothelial cell of lymphatic vessel
3
fibroblast
3
mast cell
3
pancreatic quiescent stellate cell
2
CD8-positive, alpha-beta T cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adipocyte
2
conventional dendritic cell
2
endocardial cell
2
islet of Langerhans
2
megakaryocyte
2
memory B cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neuronal stem cell
2
non-classical monocyte
2
pericyte cell
2
plasmacytoid dendritic cell
2
regular ventricular cardiac myocyte
2
regulatory T cell
2
smooth muscle cell
2
stellate neuron
1
Pancreatic islets
1
Schwann cell
1
cholangiocyte
1
dendritic cell
1
erythrocyte
1
hepatic stellate cell
1
hepatocyte
1
myofibroblast cell
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic immune cell
1
purified protein and synthetic DNA oligo binding assay
1
tissue-resident macrophage
1
type B pancreatic cell
Disease term
2
heart failure
Life stage
2
adult
Date released
2
January, 2021
2
May, 2024
Software used
1
cicero
1
macs
Lab
50
AMP-T2D consortium
17
Bing Ren, UCSD
4
Kyle Gaulton, UCSD
4
Stephen Parker, UMich
2
Jesse Engreitz, Stanford University
1
Katalin Susztak, Upenn
Project
2
AMP
2
T1D
RFA
2
AMP2
2
T1D
biosample_term_name!
H1-hESC
pancreatic delta cell
Showing 4 of 4 results
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Download
FileSet
DSR845GQF
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of smooth muscle cell derived from RV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR971YDN
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of smooth muscle cell derived from LV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D