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Citing CMDGA
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Annotation type
1
Fine-mapped variants
1
target gene predictions
Annotation Category
1
Genetic variant effects
1
Target gene links
Annotation type Category
1
RNA-seq
1
pCHi-C
Available data
1
bed bed3+
1
tsv
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
1
primary cell
1
tissue
Biosample term
2
CD4-positive, alpha-beta T cell
1
Ammon's horn
1
B cell
1
C1 segment of cervical spinal cord
1
CD8-positive, alpha-beta T cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
HepG2
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
amygdala
1
anterior cingulate cortex
1
ascending aorta
1
body of pancreas
1
cardiomyocytes (cardiac muscle cell)
1
caudate nucleus
1
cerebellum
1
cerebellum (Hemisphere)
1
coronary artery
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
erythroblast
1
frontal cortex
1
gastrocnemius medialis(Muscle - Skeletal)
1
hypothalamus
1
inflammatory macrophage
1
islet of Langerhans
1
left ventricle myocardium
1
lymphocyte of B lineage (iPSC)
1
macrophage
1
megakaryocyte
1
monocyte
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
neutrophil
1
nucleus accumbens
1
omental fat pad
1
putamen
1
right atrium auricular region
1
right lobe of liver
1
subcutaneous adipose tissue
1
substantia nigra
1
thymus
1
tibial artery
1
tibial nerve
1
undifferentiated ESC (H9 cell line)
1
white adipose cell
Organ
1
artery
1
blood vessel
1
limb
1
vasculature
Life stage
1
adult
Date released
1
March, 2020
1
May, 2020
Software used
37
macs
11
r
10
encode-ccres
5
chromhmm
4
abc
2
deltasvm
2
qTLtools
1
chicago
1
cicero
1
gtex_eqtl:V8
1
gtex_finemapping_eQTL:caveman
1
gtex_finemapping_eQTL:caviar
1
gtex_finemapping_eQTL:dapg
1
seurat
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
Showing 2 of 2 results
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Download
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR222YPS
released
Annotation file set
: Fine-mapping results from CAVIAR of tibial artery for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP