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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
target gene predictions
2
accessible chromatin
Annotation Category
5
Target gene links
2
cis-regulatory elements
Annotation type Category
4
ATAC-seq
3
DNase-seq
3
H3K27ac ChIP-Seq
3
snATAC-seq
Available data
7
bed bed3+
2
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
6
primary cell
1
tissue
Biosample term
25
endothelial cell
24
fibroblast
19
pericyte cell
18
smooth muscle cell
17
macrophage
15
CD14-positive monocyte
15
kidney
13
pancreatic acinar cell
13
pancreatic ductal cell
12
adipocyte
12
excitatory neuron
10
astrocyte
10
pancreatic alpha cell
10
pancreatic beta cell
10
pancreatic delta cell
10
pituitary stalk
9
skeletal muscle fiber
8
induced pluripotent stem cell
8
pancreatic stellate cell
7
T cell
7
keratinocyte
7
type II pneumocyte
6
CD8-positive, alpha-beta T cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dendritic cell
6
enterocyte
6
erythroblast
6
skeletal muscle satellite cell
6
type I muscle cell
6
type II muscle cell
5
B cell
5
CD4-positive helper T cell
5
basal cell
5
inhibitory neuron
5
left cardiac atrium
5
mesenchymal stem cell
4
blood vessel smooth muscle cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
hepatocyte
4
islet of Langerhans
4
liver
4
luminal epithelial cell of mammary gland
4
memory B cell
4
mesothelial cell
4
myofibroblast cell
4
natural killer cell
4
pancreatic A cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
smooth muscle cell of the esophagus
4
type B pancreatic cell
4
type I pneumocyte
3
Schwann cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
fibroblast of cardiac tissue
3
glial cell
3
goblet cell
3
mammary gland epithelial cell
3
mast cell
3
megakaryocyte
3
monocyte
3
oligodendrocyte precursor cell
3
pancreatic quiescent stellate cell
3
parietal cell
3
peptic cell
3
schwann cell
3
thyroid follicular cell
2
BJAB cell
2
CD4-positive, alpha-beta T cell
2
ESC derived cell line
2
EndoC_BH1
2
H1-hESC
2
HepG2
2
Jurkat
2
K562
2
MCF 10A cell
2
Muller cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adrenal gland
2
alveolar macrophage
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
cardiac muscle cell
2
colon goblet cell
2
conventional dendritic cell
2
eccrine cell
2
endothelial cell of hepatic sinusoid
2
endothelial cell of umbilical vein
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of lung
2
foveolar cell of stomach
2
granular cell of epidermis
2
intestinal tuft cell
2
leukocyte
2
luteal cell
2
mammary epithelial cell
2
mature NK T cell
2
melanocyte
2
mesangial cell
2
microglial cell
2
myoepithelial cell
2
naive B cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neural cell
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
oligodendrocyte
2
pancreatic polypeptide-secreting cell
2
paneth cell
2
plasma cell
2
plasmacytoid dendritic cell
2
regular atrial cardiac myocyte
2
regulatory T cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
skeletal muscle myoblast
2
skin fibroblast
2
small intestine goblet cell
2
stellate neuron
2
stomach
2
stomach neuroendocrine cell
2
stromal cell
2
trophoblast cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
uterine smooth muscle cell
2
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
A549
1
A673
1
B cell, CD19-positive
1
CD34-PB
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
GM12878
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Pancreatic islets
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
SK-N-SH
1
Satellite Cells, Skeletal Muscle
1
adipose tissue
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
bronchial goblet cell
1
cardiac ventricle
1
caudate nucleus
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
cingulate gyrus
1
colonic mucosa
1
common myeloid progenitor, CD34-positive
1
coronary artery
1
duodenal mucosa
1
embryonic stem cell
Organ
1
uterus
Life stage
adult
Date released
3
May, 2021
2
January, 2021
2
November, 2021
Software used
4
abc
2
macs
1
cicero
Lab
AMP-T2D consortium
3
Jesse Engreitz, Stanford University
2
Bing Ren, UCSD
2
Kyle Gaulton, UCSD
Project
3
AMP
2
ENCODE
2
T1D
RFA
3
AMP
2
ENCODE3
2
T1D
biosample_term_name!
heart left ventricle
lab.title!
AMP-T2D consortium
relevant_life_stage!
adult
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR254PVY
released
Annotation file set
: enhancer-gene predicton of uterus-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D