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Schema
Citing CMDGA
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Annotation type
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
57
A549
19
K562
19
MCF-7
11
HeLa-S3
9
endometrium adenocarcinoma
9
immortal human breast epithelial cell line cell
7
LNCaP clone FGC
7
T47D
5
GM12878
4
A172
4
ACC112
4
ACHN
4
C4-2B
4
Caki2
4
DOHH2
4
GM04503
4
GM04504
4
GM23248
4
GM23338
4
H4
4
H54
4
HAP-1
4
HCT116
4
HL-60
4
HS-27A
4
HS-5
4
HT-29
4
HT1080
4
KBM-7
4
KMS-11
4
LHCN-M2
4
Loucy
4
M059J
4
MM.1S
4
NB4
4
NCI-H929
4
OCI-LY1
4
OCI-LY3
4
OCI-LY7
4
PC-3
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
RWPE2
4
SJSA1
4
SK-MEL-5
4
SU-DHL-6
4
SW480
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
3
8988T
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
COLO829
3
Caco-2 cell
3
GM10248
3
GM10266
3
GM12875
3
GM19238
3
GM19239
3
GM19240
3
HPDE6-E6E7
3
HuH-7
3
HuH-7.5
KARPAS-422 cell
3
LoVo cell
3
MCF 10A
3
NCI-H226 cell
3
VCaP cell
3
iPS-NIHi11
3
iPS-NIHi7
3
renal cell carcinoma
2
AG10803
2
LNCAP
1
A-673 cell
1
AG09309
1
AG09319
1
Caco-2
1
HepG2
1
Ishikawa
1
Karpas-422
1
LoVo
1
NCI-H226
1
RCC
1
VCaP
1
cells - EBV-transformed lymphocytes
1
smooth muscle cell of the coronary artery
Disease term
3
prostate carcinoma
Organ
3
prostate gland
Life stage
3
adult
Date released
3
September, 2022
Software used
2
r
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
KARPAS-422 cell
Showing 3 of 3 results
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Download
FileSet
DSR454RXA
released
Annotation file set
: Candidate regulatory elements for BSS01888 VCaP cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR927DVR
released
Annotation file set
: Target gene predictions for BSS01888 VCaP cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR772VUW
released
Annotation file set
: Chromatin states for BSS01888 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP