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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
DNase-seq
1
snATAC-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
cell line
1
primary cell
Biosample term
3
HT-29
3
RKO
3
SW480
3
colon epithelial cell
3
enterocyte
2
HCT-116 cell
2
enteric smooth muscle cell
2
large intestine
1
Crypt of Lieberkuhn
1
Peyer's patch
1
colon
1
colonic mucosa
1
crypt of Lieberkuhn
1
enterocyte of epithelium of small intestine
1
intestinal epithelial cell
1
intestinal epithelium
1
paneth cell
1
sigmoid colon
1
small intestine
1
small intestine goblet cell
1
transverse colon
0
Caco-2
Organ
4
intestine
3
large intestine
1
epithelium
1
small intestine
Date released
2
February, 2021
1
June, 2020
1
November, 2021
Software used
4
macs
2
encode-ccres
2
r
1
abc
1
chromhmm
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
1
ENCODE
RFA
3
AMP
1
ENCODE3
Showing 4 of 4 results
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Download
FileSet
DSR273VIV
released
Annotation file set
: Accessible chromatin annotation of Small Intestinal Enterocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR480BBB
released
Annotation file set
: Histone modifications annotation for Digestive tract SW_480 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR783QVF
released
Annotation file set
: Binding sites annotation for Digestive tract SW_480 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR118XAD
released
Annotation file set
: Accessible chromatin annotation for Digestive tract SW 480 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP