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Schema
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Annotation type
3
target gene predictions
1
candidate regulatory elements
Annotation Category
3
Target gene links
1
cis-regulatory elements
Annotation type Category
4
DNase-seq
1
ChIP-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
3
GRCh38
1
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
70
large intestine
26
sigmoid colon
23
transverse colon
22
HCT116
12
colonic mucosa
9
HT-29
9
colon epithelial cell
9
mucosa of rectum
8
SW480
8
muscle layer of colon
5
RKO
4
Caco-2
4
HCT-116 cell
4
rectum smooth muscle tissue
3
mucosa of descending colon
2
LoVo
2
left colon
1
HCEC 1CT
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
rectal smooth muscle tissue
Organ
4
intestine
4
large intestine
Life stage
1
adult
Date released
3
July, 2026
1
February, 2021
Software used
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
Collection Tags
3
ENCODE-rE2G
1
ENCODE
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR710917
released
Annotation file set
: Target gene predictions for Caco-2 (EFO:0001099) derived from ENCODE-rE2G (ENCSR741EHJ).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR305145
released
Annotation file set
: Target gene predictions for Caco-2 (EFO:0001099) derived from ENCODE-rE2G (ENCSR936BUB).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR152130
released
Annotation file set
: Target gene predictions for Caco-2 (EFO:0001099) derived from ENCODE-rE2G (ENCSR284THK).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR731FHY
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE Caco-2
Lab:
AMP-T2D consortium
Project:
AMP