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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
differential activity
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
cis-regulatory elements
2
Gene expression levels
Annotation type Category
2
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
Available data
2
bed bed3+
2
tsv
1
bed bed9
File set status
5
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
3
cell line
2
primary cell
Biosample term
46
kidney
22
renal cortex interstitium
22
renal pelvis
22
right kidney
18
left kidney
8
left renal cortex interstitium
8
left renal pelvis
8
right renal pelvis
7
HEK293
7
right renal cortex interstitium
6
glomerular visceral epithelial cell
5
epithelial cell of proximal tubule
5
glomerular endothelial cell
5
kidney glomerular epithelial cell
5
kidney tubule cell
5
renal cortical epithelial cell
4
cortex of kidney
4
kidney epithelial cell
3
ACHN
3
Caki2
3
RCC 7860
3
kidney capillary endothelial cell
3
renal cell carcinoma
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
Connecting Tubule Cell
2
Cortical Thick Ascending Limb Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
G401
2
Glomerular Capillary Endothelial Cell
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Medullary Thick Ascending Limb Cell
2
Parietal Epithelial Cell
2
Peritubular Capillary Endothelial Cell
2
Podocyte
2
Principal Cell
2
Proximal Tubule Epithelial Cell Segment 1 and 2
2
Proximal Tubule Epithelial Cell Segment 3
2
Renin-positive Juxtaglomerular Granular Cell
2
kidney epithelium
1
left kidney
1
HEK293T
1
RCC
1
glomerular epithelium
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
metanephros
1
nephron tubule
1
parietal epithelial cell
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
1
renal principal cell
1
ureteric bud
Disease term
1
Acute kidney failure, unspecified
1
Chronic kidney disease (CKD)
1
clear cell renal carcinoma
Organ
5
kidney
2
epithelium
Life stage
4
adult
Date released
2
September, 2023
1
February, 2021
1
June, 2020
1
September, 2022
Software used
r
2
deseq2
1
chromhmm
1
encode-ccres
1
macs
Lab
3
AMP-T2D consortium
2
KPMP
Project
3
AMP
2
KPMP
RFA
3
AMP
2
KPMP
biosample_term_name!
kidney interstitial fibroblast
software_used.software.name!
r
Showing 5 of 5 results
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Download
FileSet
DSR687HBV
released
Annotation file set
: Differential activity annotation of Parietal Epithelial Cell between CKD and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR470CJS
released
Annotation file set
: Differential activity annotation of Parietal Epithelial Cell between AKI and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR032YTT
released
Annotation file set
: Chromatin states for BSS00160 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR162JPE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE Caki2
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR035CQD
released
Annotation file set
: Accessible chromatin annotation for Kidney Caki-2 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP