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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
RNA-seq
Available data
3
bed bed3+
1
bed bed9
1
tsv
File set status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
tissue
primary cell
5
in vitro differentiated cells
Biosample term
64
HeLa-S3
62
A549
54
H1-hESC
50
neural progenitor cell
43
hematopoietic multipotent progenitor cell
41
K562
26
MCF-7
23
EndoC_BH1
23
adipocyte
20
breast cancer cell
19
HFFc6
17
HepG2
17
embryonic stem cell
16
GM12878
16
H9
16
induced pluripotent stem cell
12
lymphoblastoid cell line
12
mesenchymal stem cell
12
neuroblastoma cell
11
cardiac muscle cell
10
22Rv1
10
Rhabdomyosarcoma
10
SK-N-DZ
10
SK-N-SH
10
cardiomyocytes
10
diffuse intrinsic pontine glioma
10
endodermal cell
10
gastric cancer cell
10
lymphocyte
10
progenitor cell of endocrine pancreas
9
HEK293
9
IMR-90
9
NAMALWA cell
9
fibroblast cell line
9
liposarcoma
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
GM19240
8
HAP-1
8
HL-60
8
HT-29
8
KARPAS-422 cell
8
MM.1S
8
OCI-LY7
8
PC-9
8
SK-N-MC
8
T-cell acute lymphoblastic leukemia
8
WERI-Rb-1
8
cardiomyocytes (cardiac muscle cell)
8
endometrium adenocarcinoma
8
esophageal adenocarcinoma
8
extended pluripotent stem (EPS) cells
8
immortal human breast epithelial cell line cell
8
mesendoderm
8
pituitary stalk
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19238
7
GM19239
7
GM23248
7
Jurkat
7
LHCN-M2
7
LNCaP clone FGC
7
LoVo cell
7
MG63
7
NT2-D1 cell
7
PC-3
7
RPMI8226
7
RWPE1
7
SW480
7
T47D
7
WI38
7
chondrocyte
7
hESC cell
7
neuronal stem cell
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM18507
6
H7-hESC
6
HCT116
6
HUES6
6
HUES8
6
HuH-7
6
KBM-7
6
LNCAP
6
OCI-LY1
6
Rh-4 cell
6
SGBS preadipocytes
6
SJSA1
6
acute myeloid leukemia
6
bipolar neuron
6
cardiac precursors (cardiac muscle cell)
6
iPSC derived cell line
6
mesodermal cell
6
neuroblastoma cell line
5
A172
5
A673
5
ACHN
5
Caki2
5
CyT49
5
Ewing sarcoma
5
GM04503
5
GM04504
5
H4
5
HCT-116 cell
5
HK-2 cell
5
HUES64
5
L1-S8
5
M059J
5
NB4
5
OCI-LY3
5
Panc1
5
RCC 7860
5
RPMI7951
5
RS4-11 cell
5
SJCRH30
5
SK-MEL-5
5
U937
5
VCaP cell
5
dendritic cell
5
dermal fibroblast
5
esophageal squamous cell carcinoma
5
fibroblast of cardiac tissue
5
osteosarcoma
5
prostate cancer cell line
4
ACC112
4
AG08396 cell
4
B cell
4
C4-2B
4
COLO205
4
DND-41
4
DOHH2
4
EH
4
EL
4
ELF-1
4
ELR
4
G401
4
GM03348
4
GM12873
4
GM18505
4
GM19099
4
GM19193
4
GM23338
4
H54
4
HAC cell
4
HBMEC cell
4
HS-27A
4
HS-5
4
HS-SY-2 cell
4
HT1080
4
HUES48
4
KMS-11
4
KOPT-K1
4
L1-S8R
4
Loucy
4
MDA-MB-231 cell
4
Mantle cell lymphoma
4
NCCIT cell
4
NCI-H226 cell
4
NCI-H460 cell
4
NCI-H929
4
NHEK
4
Normal Human Astrocytes
4
PANC-1 cell
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
RKO
4
RWPE2
4
SAEC
4
SK-N-SH_RA
4
SU-DHL-6
4
T-47D cell
4
Tumor-derived cell line
4
U-266 cell
4
U-87 MG
4
U2OS
4
UCSF-4
4
WI-38 cell
4
adipose-derived stem cell
4
colon adenocarcinoma
4
colon carcinoma
4
diffuse large B-cell lymphoma
4
ectodermal cell
4
glioblastoma cell
4
glioblastoma multiforme cancer stem cell
4
glioma cell
Life stage
4
embryonic
Date released
3
September, 2022
1
February, 2021
1
May, 2021
Software used
3
r
1
chromhmm
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_type!
primary cell
tissue
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR087ISF
released
Annotation file set
: Candidate regulatory elements for BSS01612 smooth muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR234JGB
released
Annotation file set
: Target gene predictions for BSS01612 smooth muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR708TJP
released
Annotation file set
: Chromatin states for BSS01612 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR656HJI
released
Annotation file set
: Gene expression annotation of smooth muscle cell_SMC ISL1-SMMHC+ on day 10 from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR634BEA
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE smooth muscle cell
Lab:
AMP-T2D consortium
Project:
AMP