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Schema
Citing CMDGA
Clear Filters
Annotation type
3
gene expression
2
differential activity
1
accessible chromatin
1
eQTL
1
target gene predictions
Annotation Category
5
Gene expression levels
1
Genetic variant effects
1
Target gene links
1
cis-regulatory elements
Annotation type Category
5
single cell RNA-seq
2
snATAC-seq
1
RNA-seq
Available data
5
tsv
2
bed bed3+
1
bigWig
File set status
8
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
128
monocyte
54
common myeloid progenitor, CD34-positive
50
CD8-positive, alpha-beta T cell
43
B cell
42
endothelial cell
33
hepatocyte
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
31
CD14-positive monocyte
31
macrophage
26
regulatory T cell
24
natural killer cell
24
pericyte cell
23
epithelial cell of proximal tubule
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
T-helper 1 cell
22
smooth muscle cell
21
T-helper 17 cell
20
glomerular endothelial cell
20
mononuclear cell
19
endothelial cell of umbilical vein
19
foreskin keratinocyte
18
pancreatic beta cell
18
pancreatic ductal cell
17
T-helper 2 cell
17
astrocyte
17
keratinocyte
17
pancreatic alpha cell
17
trophoblast cell
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
pancreatic acinar cell
16
pancreatic delta cell
15
CD4-positive, alpha-beta T cell
15
foreskin fibroblast
15
neutrophil
15
osteoblast
15
skeletal muscle myoblast
14
naive thymus-derived CD4-positive, alpha-beta T cell
13
mammary gland epithelial cell
13
neurosphere
13
skeletal muscle satellite cell
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
12
mammary epithelial cell
11
bronchial epithelial cell
11
erythroblast
10
dermis blood vessel endothelial cell
10
glomerular visceral epithelial cell
9
epithelial cell of prostate
9
hepatic stellate cell
9
kidney tubule cell
9
mast cell
9
mature neutrophil
9
memory B cell
9
naive T cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
retinal pigment epithelial cell
9
skeletal muscle fiber
8
fibroblast of breast
8
glutamatergic neuron
8
myoepithelial cell of mammary gland
8
pancreatic stellate cell
8
skin fibroblast
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
endothelial cell of lymphatic vessel
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney epithelial cell
7
kidney glomerular epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
7
mesangial cell
7
mesenchymal stem cell
7
renal cortical epithelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
adipocyte
6
alternatively activated macrophage
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
gamma-delta T cell
6
myofibroblast cell
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
6
plasma cell
6
pulmonary artery endothelial cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
brain microvascular endothelial cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
endocardial cell
5
fibroblast of the aortic adventitia
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
pancreatic endothelial cell
4
activated CD4-positive, alpha-beta T cell
4
adult endothelial progenitor cell
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of peridontal ligament
4
fibroblast of the conjunctiva
4
iris pigment epithelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
nephron progenitor
Disease term
1
Acute kidney failure, unspecified
1
Chronic kidney disease (CKD)
1
acute kidney failure
1
chronic kidney disease
Life stage
5
adult
Date released
5
September, 2023
2
January, 2021
1
January, 2022
Software used
3
r
2
deseq2
1
cicero
1
macs
1
qTLtools
Lab
5
KPMP
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
5
KPMP
2
T1D
1
AMP
RFA
5
KPMP
2
T1D
1
AMP
month_released!
June, 2020
Showing 8 of 8 results
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Download
FileSet
DSR773LNL
released
Annotation file set
: Differential activity annotation of Cycling T Cell between CKD and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR283OCM
released
Annotation file set
: Differential activity annotation of Cycling T Cell between AKI and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR665PME
released
Annotation file set
: Gene expression annotation of Cycling T Cell of healthy individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR681GXT
released
Annotation file set
: Gene expression annotation of Cycling T Cell of CKD individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR079RFQ
released
Annotation file set
: Gene expression annotation of Cycling T Cell of AKI individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR594UIG
released
Annotation file set
: CD8 T-cell anti-CD3-CD28 eQTL of studay Schmiedel_2018 from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR630CDR
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of activated_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR069AHP
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of activated_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D