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Citing CMDGA
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Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
snATAC-seq
Available data
1
bed bed3+
1
bigWig
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
125
monocyte
69
heart
62
stomach
61
HeLa-S3
56
A549
56
brain
51
lung
50
H1-hESC
50
muscle of arm
48
kidney
48
small intestine
46
adrenal gland
44
neural progenitor cell
44
placenta
43
muscle of leg
40
large intestine
39
common myeloid progenitor, CD34-positive
39
left lung
39
muscle of back
37
CD8-positive, alpha-beta T cell
36
K562
36
liver
36
thymus
35
retina
34
right lung
32
B cell
32
hematopoietic multipotent progenitor cell
32
islet of Langerhans
32
right kidney
30
renal pelvis
29
renal cortex interstitium
27
CD4-positive, alpha-beta memory T cell
27
heart left ventricle
27
left kidney
26
adipose tissue
25
spinal cord
22
regulatory T cell
22
spleen
22
tibial nerve
21
CD8-positive, alpha-beta memory T cell
20
T-helper 1 cell
20
pigmented layer of retina
19
EndoC_BH1
19
HFFc6
19
body of pancreas
19
coronary artery
18
T-helper 17 cell
18
caudate nucleus
18
right atrium auricular region
17
MCF-7
17
hepatocyte
17
mononuclear cell
17
tibial artery
16
frontal cortex
16
heart right ventricle
16
pancreas
16
psoas muscle
16
sigmoid colon
15
T cell
15
T-helper 2 cell
15
ovary
15
trophoblast cell
14
cerebellum
14
subcutaneous adipose tissue
14
thyroid gland
13
ascending aorta
13
endothelial cell of umbilical vein
13
foreskin keratinocyte
13
gastrocnemius medialis
13
neutrophil
13
omental fat pad
12
CD14-positive monocyte
12
chorionic villus
12
embryonic stem cell
12
endocrine pancreas
12
muscle of trunk
12
substantia nigra
12
transverse colon
11
Ammon's horn
11
GM12878
11
HepG2
11
aorta
11
fibroblast of cardiac tissue
11
fibroblast of lung
11
macrophage
11
putamen
11
testis
10
Peyer's patch
10
adipocyte
10
chorion membrane
10
fibroblast of dermis
10
layer of hippocampus
10
mammary gland epithelial cell
10
natural killer cell
10
retinal pigment epithelial cell
10
skeletal muscle tissue
9
H9
9
endometrium adenocarcinoma
9
extended pluripotent stem (EPS) cells
9
foreskin fibroblast
9
immortal human breast epithelial cell line cell
9
kidney tubule cell
9
lymphocyte
9
mesenchymal stem cell
9
upper lobe of left lung
8
angular gyrus
8
esophagus
8
esophagus muscularis mucosa
8
left renal cortex interstitium
8
left renal pelvis
8
naive T cell
8
progenitor cell of endocrine pancreas
8
skeletal muscle myoblast
8
thoracic aorta
8
trophoblast
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-SH
7
breast epithelium
7
bronchial epithelial cell
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
epithelial cell of prostate
7
epithelial cell of proximal tubule
7
esophagus squamous epithelium
7
eye
7
glomerular endothelial cell
7
glomerular visceral epithelial cell
7
kidney glomerular epithelial cell
7
limb
7
lymphoblastoid cell line
7
neurosphere
7
osteoblast
6
22Rv1
6
Brodmann (1909) area 46
6
GM19240
6
LNCaP clone FGC
6
SGBS preadipocytes
6
T47D
6
amygdala
6
anterior cingulate cortex
6
cardiomyocytes (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
cingulate gyrus
6
colonic mucosa
6
dermis blood vessel endothelial cell
6
dermis lymphatic vessel endothelial cell
6
duodenal mucosa
6
endodermal cell
6
fibroblast of breast
6
globus pallidus
6
hepatic stellate cell
6
hypothalamus
6
iPSC derived cell line
6
keratinocyte
6
kidney epithelial cell
6
left cardiac atrium
6
lower leg skin
6
mature neutrophil
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
occipital lobe
6
right lobe of liver
6
right renal pelvis
6
skin fibroblast
6
temporal lobe
6
tongue
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta T cell
5
Caco-2 cell
5
GM06990
5
GM12864
5
GM12865
5
GM18507
5
GM19238
5
GM19239
5
HCT116
5
HEK293
5
HL-60
5
HUES8
5
IMR-90
5
KARPAS-422 cell
5
NT2-D1 cell
5
SK-N-MC
5
T follicular helper cell
5
WERI-Rb-1
5
alternatively activated macrophage
5
astrocyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
Organ
1
musculature of body
Life stage
1
unknown
Date released
1
May, 2022
Software used
1
macs
Lab
5
KPMP
4
Stephen Parker, UMich
2
Bing Ren, UCSD
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
month_released!
February, 2021
Showing 1 of 1 results
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Download
FileSet
DSR704QRW
released
Annotation file set
: Accessible chromatin from snATAC-seq of type I muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP