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Schema
Citing CMDGA
Clear Filters
Annotation type
3
gene expression
3
target gene predictions
2
differential activity
Annotation Category
5
Gene expression levels
3
Target gene links
Annotation type Category
5
single cell RNA-seq
3
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
5
tsv
3
bed bed3+
File set status
8
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
1
tissue
Biosample term
130
monocyte
50
CD8-positive, alpha-beta T cell
39
endothelial cell
30
hepatocyte
29
fibroblast
28
macrophage
20
epithelial cell of proximal tubule
20
smooth muscle cell
19
CD14-positive monocyte
19
pancreatic ductal cell
19
pericyte cell
19
regulatory T cell
18
glomerular endothelial cell
17
pancreatic beta cell
16
B cell
16
endothelial cell of hepatic sinusoid
16
pancreatic acinar cell
16
pancreatic alpha cell
15
CD4-positive, alpha-beta T cell
15
common myeloid progenitor, CD34-positive
14
T-helper 1 cell
14
astrocyte
14
endothelial cell of umbilical vein
14
naive thymus-derived CD4-positive, alpha-beta T cell
14
osteoblast
14
pancreatic delta cell
13
foreskin fibroblast
13
mammary epithelial cell
12
T-helper 17 cell
12
excitatory neuron
12
natural killer cell
11
erythroblast
11
keratinocyte
10
T cell
10
skeletal muscle myoblast
10
skeletal muscle satellite cell
9
mature neutrophil
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
neutrophil
9
skeletal muscle fiber
8
T-helper 2 cell
8
glomerular visceral epithelial cell
8
glutamatergic neuron
8
pancreatic stellate cell
7
cardiac muscle cell
7
fibroblast of lung
7
foreskin keratinocyte
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
mesenchymal stem cell
7
retinal pigment epithelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
T-cell
6
alternatively activated macrophage
6
bronchial epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
gamma-delta T cell
6
hepatic stellate cell
6
mast cell
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
6
plasma cell
6
trophoblast cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
CD4-positive, alpha-beta memory T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of villous mesenchyme
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney glomerular epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
myofibroblast cell
5
pancreatic endothelial cell
5
renal cortical epithelial cell
5
tracheal epithelial cell
4
CD1c-positive myeloid dendritic cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adipocyte
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
choroid plexus epithelial cell
4
dermis blood vessel endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
kidney connecting tubule epithelial cell
4
kidney epithelial cell
4
kidney tubule cell
4
leukocyte
4
luminal epithelial cell of mammary gland
4
mammary gland epithelial cell
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
nephron progenitor
4
neurosphere
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
pulmonary artery endothelial cell
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
Th1 cell
Th17 cell
3
activated CD8-positive, alpha-beta T cell
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
blood cell
3
bone marrow cell
3
brain pericyte
Disease term
1
Acute kidney failure, unspecified
1
Chronic kidney disease (CKD)
1
acute kidney failure
1
chronic kidney disease
Organ
8
epithelium
5
kidney
3
pancreas
Life stage
5
adult
Date released
5
September, 2023
2
November, 2021
1
May, 2021
Software used
3
abc
3
r
2
deseq2
Lab
5
KPMP
2
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
5
KPMP
2
ENCODE
1
AMP
RFA
5
KPMP
2
ENCODE3
1
AMP
biosample_term_name!
Th17 cell
month_released!
September, 2022
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR710IEW
released
Annotation file set
: Differential activity annotation of Degenerative Connecting Tubule Cell / Principal Cell between CKD and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR311TAM
released
Annotation file set
: Differential activity annotation of Degenerative Connecting Tubule Cell / Principal Cell between AKI and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR256UFX
released
Annotation file set
: Gene expression annotation of Degenerative Connecting Tubule Cell / Principal Cell of healthy individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR471VDW
released
Annotation file set
: Gene expression annotation of Degenerative Connecting Tubule Cell / Principal Cell of CKD individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR273PZN
released
Annotation file set
: Gene expression annotation of Degenerative Connecting Tubule Cell / Principal Cell of AKI individuals from KPMP scRNA-seq
Lab:
KPMP
Project:
KPMP
FileSet
DSR855IQO
released
Annotation file set
: Target gene predictions of Pancreatic Beta Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR451TRZ
released
Annotation file set
: Target gene predictions of Pancreatic Beta Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR633DNL
released
Annotation file set
: enhancer-gene predicton of pancreatic-beta-cell-AMP from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP