Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
1
ATAC-seq
Available data
4
bed bed3+
1
bed bed9
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
4
cell line
1
tissue
Biosample term
56
large intestine
23
sigmoid colon
22
foreskin keratinocyte
19
foreskin fibroblast
19
transverse colon
10
colonic mucosa
9
colon epithelial cell
9
foreskin melanocyte
9
mucosa of rectum
8
HT-29
8
muscle layer of colon
7
SW480
6
HCT116
4
EH
4
EL
4
ELR
4
HCT-116 cell
4
RKO
4
femur
4
rectum smooth muscle tissue
3
arm bone
3
leg bone
2
skin of prepuce of penis
1
Caco-2
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
rectal smooth muscle tissue
Organ
4
penis
1
bone element
1
skeleton
0
large intestine
Life stage
3
newborn
1
embryonic
1
postnatal
Date released
3
September, 2022
2
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR589YDI
released
Annotation file set
: Candidate regulatory elements for BSS00275 EH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR754LTR
released
Annotation file set
: Target gene predictions for BSS00275 EH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR752ZBL
released
Annotation file set
: Chromatin states for BSS00275 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR470IMV
released
Annotation file set
: GSE122877 accessible chromatin annotation of Proximal radial growth plates E59
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR483QPJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE EH
Lab:
AMP-T2D consortium
Project:
AMP