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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
candidate regulatory elements
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
4
DNase-seq
1
Capture-C
1
ChIP-seq
Available data
5
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
3
primary cell
1
cell line
1
in vitro differentiated cells
Biosample term
52
brain
12
caudate nucleus
12
layer of hippocampus
10
pituitary stalk
9
choroid plexus epithelial cell
9
substantia nigra
9
temporal lobe
8
SK-N-DZ
8
SK-N-SH
7
SK-N-MC
7
cerebellum
7
cingulate gyrus
7
frontal cortex
6
Ammon's horn
6
BE(2)-C
6
angular gyrus
6
globus pallidus
6
midbrain
6
putamen
5
cardiac fibroblast
5
Daoy
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
4
A172
4
Brodmann (1909) area 46
4
M059J
4
U-87 MG
4
brain microvascular endothelial cell
4
brain pericyte
4
cerebellar cortex
4
medulla oblongata
4
middle frontal gyrus
4
pons
3
H54
3
inferior parietal cortex
3
medulloblastoma
3
prefrontal cortex
2
middle frontal area 46
1
brain microvascular endothelial cell
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
amygdala
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
cerebellum (Hemisphere)
1
claustrum of brain
1
dentate nucleus
1
dorsal lateral geniculate nucleus
1
dorsolateral prefrontal cortex
1
dura mater
1
entorhinal cortex
1
frontal pole
1
hippocampal neuron
1
hypothalamus
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus accumbens
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary gland
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
Organ
5
brain
4
connective tissue
Life stage
1
unknown
Date released
1
February, 2021
1
January, 2020
1
June, 2020
1
May, 2020
1
September, 2023
Software used
2
macs
1
chicago
1
deltasvm
1
encode-ccres
Lab
4
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
5
AMP
RFA
4
AMP
1
AMP2
month_released!
November, 2019
Showing 5 of 5 results
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Download
FileSet
DSR383OMT
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC derived Hypothalamic Progenitor (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR838IVA
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE brain pericyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR229BKS
released
Annotation file set
: Accessible chromatin annotation for Cardiovascular HBVP from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR646QPA
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain pericyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR585ZLG
released
Annotation file set
: Accessible chromatin annotation of brain pericyte from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP