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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
1
HiC
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
cell line
Biosample term
5
islet of Langerhans
4
Ammon's horn
4
adipocyte
4
cardiomyocytes (cardiac muscle cell)
4
caudate nucleus
4
hepatocyte
4
liver
4
subcutaneous adipose tissue
4
substantia nigra
3
C1 segment of cervical spinal cord
3
amygdala
3
anterior cingulate cortex
3
ascending aorta
3
body of pancreas
3
cerebellum
3
cerebellum (Hemisphere)
3
coronary artery
3
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
frontal cortex
3
gastrocnemius medialis(Muscle - Skeletal)
3
hypothalamus
3
left ventricle myocardium
3
nucleus accumbens
3
omental fat pad
3
pancreas
3
psoas muscle
3
putamen
3
right atrium auricular region
3
right lobe of liver
3
tibial artery
3
tibial nerve
2
ESC derived cell line
2
HepG2
2
aorta
2
cardiac precursors (cardiac muscle cell)
2
endothelial cell of umbilical vein
2
heart left ventricle
2
heart right ventricle
1
B-lymphoblastoid cell line
1
CD34-PB
1
EndoC_BH1
1
GM12878
1
H1-hESC
1
K562
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
adipose tissue
1
adrenal gland
1
bladder (urinary bladder)
1
cingulate gyrus
1
colonic mucosa
1
dorsolateral prefrontal cortex
1
duodenal mucosa
1
embryonic stem cell
1
esophagus
1
fibroblast cell line
1
fibroblast of lung
1
gastric (mucosa of stomach)
1
heart
keratinocyte
1
layer of hippocampus
1
lung
1
lymphocyte of B lineage (iPSC)
1
mammary epithelial cell
1
mesenchymal stem cell
1
mesendoderm
1
mid-frontal lobe
1
mucosa of rectum
1
neural progenitor cell
1
ovary
1
rectum smooth muscle tissue
1
right cardiac atrium
1
sigmoid colon
1
skeletal muscle
1
skeletal muscle myoblast
1
small intestine
1
spleen
1
stomach smooth muscle
1
subcutaneous abdominal adipose tissue
1
temporal lobe
1
thymus
1
trophoblast
1
white adipose cell
Organ
4
connective tissue
1
epithelium
1
pancreas
Date released
19
May, 2021
7
February, 2021
6
September, 2022
4
August, 2017
4
February, 2024
2
March, 2023
1
February, 2023
1
June, 2020
1
March, 2020
1
May, 2020
1
November, 2019
1
November, 2021
1
November, 2022
1
October, 2019
Software used
4
chromhmm
1
hiccups
Lab
4
Stephen Parker, UMich
1
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
keratinocyte
Showing 5 of 5 results
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Download
FileSet
DSR373FUA
released
Annotation file set
: A target gene prediction annotation in EndoC_BH1 of DSR433ZII Hi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR644651
released
Annotation file set
: ChromHMM 13-state model for hASC-t4
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR798156
released
Annotation file set
: ChromHMM 13-state model for hASC-t3
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR104634
released
Annotation file set
: ChromHMM 13-state model for hASC-t2
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR863340
released
Annotation file set
: ChromHMM 13-state model for hASC-t1
Lab:
Stephen Parker, UMich
Project:
AMP